Free Organic Chemistry Analysis and Visualisation Tool; Chemical formula editor, calculation of threedimensional molecular structures, high-quality realtime rendering, ...
Dragging and Dropping Components for Multi-projection Applications
This component set for the Unity game engine facilitates the development of immersive and interactive multi-projection applications. The drag-and-drop components allow Unity applications to run on a commodity PC cluster with passive support for stereoscopy, perspective correction according to the user's viewpoint and access to special servers to provide device-independent features. Cite us. Please check the package main paper (1), the survey used as base (2), and some multiprojection applications built with this custom Unity package (3). (1) http://link.springer.com/chapter/10.1007/978-3-319-21413-9_19 [best paper award] (2) http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7300728 (3) http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7272633 Access Files for package versions and an example project with documentation.
Software to make fast synthesis of spherical harmonics global models
This software computes synthesis of spherical harmonics models on sparse coordinates or grids (provided in a geodetic or geocentric reference system). It exploits basic parallelism using openmp directives. A solution with MPI has not be taken into account since it cannot be so easily manageble by final users.
miRDeep-P,miRDP for short, is a computational tool for analyzing the microRNA (miRNA) transcriptome in plants.
VHF-UHF propagation prediction and radio coverage analysis tool.
QRadioPredict is an experimental software for VHF-UHF propagation prediction and radio coverage analysis. Currently it works on Linux and Windows 32 bit (Vista tested). Can be used as a repeater site planing tool. Uses OpenStreetMap tiles or public sattelite imagery as background. Elevation profiles are taken from NASA 1 degree SRTM 3 arcsec elevation files (*.hgt) obtainable from various sources. Uses a new algorithm for glound clutter attenuation prediction, based on a ray model. Terrain type data is taken from Corine CLC2006 shapefiles, which gives great accuracy for all of Europe, or from any other land cover data such as VMAP0 shapefiles. Has an internal APRS client which can be used to display stations as a landmark. Can use antenna radiation patterns generated by 4NEC2 or other NEC2 compatible antenna modelling programs. QRadioPredict can operate as a traditional standalone program or can be connected to Flightgear for real-time radio analysis.
Qt based Veroboard, Perfboard, and PCB layout and routing application
Cross-platform software for producing Veroboard (stripboard), Perfboard, and single-sided PCB layouts. Automatically prevents short circuits and checks for open circuits. Built using the Qt cross platform library, and tested on Linux (32-bit and 64-bit) and on Windows 7 (32-bit and 64-bit). Precompiled versions available for Windows 7 (32 bit and 64 bit) and for 64-bit Linux Mint 18.3 (Cinnamon/MATE/Xfce/KDE).
An open source implementation of the High Level Architecture Run-Time Infrastructure. Focused on modularity and flexibility, Portico provides an extensible environment to support HLA simulation development and research.
QXRD is software for the acquisition and analysis of X-ray data taken with 2 dimensional detectors. The software can drive a Perkin Elmer XRD series flat panel detector and can be remote-controlled via a socket interface, or directly from SPEC
Ctrax is a machine vision program for estimating the positions and orientations of many walking fruit flies, maintaining their individual identities over long periods of time with minimal supervision, and on average for 1.5 fly-hours automatically.
Free software for generating understandable and accurate fuzzy systems
GUAJE stands for Generating Understandable and Accurate fuzzy models in a Java Environment. Thus, it is a free software tool (licensed under GPL-v3) with the aim of supporting the design of interpretable and accurate fuzzy systems by means of combining several preexisting open source tools, taking profit from the main advantages of all of them. It is a user-friendly portable tool designed and developed in order to make easier knowledge extraction and representation for fuzzy systems, paying special attention to interpretability issues. GUAJE lets the user define expert variables and rules, but also provide supervised and fully automatic learning capabilities. Both types of knowledge, expert and induced, are integrated under the expert supervision, ensuring interpretability, simplicity and consistency of the knowledge base along the whole process. Notice that, GUAJE is is an upgraded version of the free software called KBCT (Knowledge Base Configuration Tool).
Molecular Dynamics Cell Construction
This is a collection of software modifications created to integrate NanoEngineer-1, PACKMOL and MSI2LMP for the purpose of easily creating molecular dynamics cells. NanoEngineer-1 is a molecular CAD software written by Nanorex and provides the user an easy way to create molecules, while the software modifications allow the user to type atoms using multiple force fields. PACKMOL can generate a random collection of molecules using the molecule templates from NanoEngineer-1 thus providing the initial MD cell. Modifications to PACKMOL allow the atom type data to be passed through to the MSI2LMP software. MSI2LMP creates a LAMMPS input file based on class I or class II force fields. MSI2LMP was modified to use numerically coded force field data generated by NanoEngineer-1. The MMP file format was extended and integrated into all three software applications. http://www.nanoengineer-1.net http://www.ime.unicamp.br/~martinez/packmol/ http://lammps.sandia.gov/
Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
PCRaster environmental modeling software
Note: Active projects have been copied to Github: https://github.com/pcraster PCRaster is a collection of tools and software libraries tailored to the construction of spatio-temporal environmental models. Application domains are amongst others hydrology (rainfall-runoff, global water balance, groundwater (with Modflow)), ecology, or land use change. Two scripting languages (PCRcalc and Python) include a rich set of spatial operations for manipulating and analysing raster maps. A Python framework supports Monte Carlo simulations and data assimilation (Ensemble Kalman Filter and Particle Filter). The Aguila tool allows for the interactive visualisation of stochastic spatio-temporal data.
PixelLight is a cross-platform application framework
PixelLight is a cross-platform application framework for any kind of 3D applications like games, interactive simulations or visualizations. It's written in C++ and has been designed with flexibility and extensibility as one of it's main goals.
Ab initio simulator for thermal transport and lattice anharmonicity
ALAMODE is designed for analyzing lattice anharmonicity and lattice thermal conductivity of solids. By using an external DFT package such as VASP and Quantum ESPRESSO, you can extract harmonic and anharmonic force constants straightforwardly with ALAMODE. Using the anharmonic force constants, you can also calculate lattice thermal conductivity from first principles. For more information about ALAMODE, please visit the following webpages: Documentation : http://alamode.readthedocs.io/en/latest/ git repository : https://github.com/ttadano/alamode
Haytham is an open source gaze tracker
Haytham is an open source video based eye tracker suited for head-mounted or remote setups. It provides real-time gaze estimation in the user’s field of view or the computer display by analyzing eye movement. Haytham offers gaze-based interaction with computer screens in fully mobile situations. The software is built by C#, using Emgu and AForge image processing libraries. LICENSE The Haytham is released under a dual license: FREE VERSION: The source code is released under GPL version 3.0. In short, it means that any distributed project that includes or links any portion of Haytham source code has to be released with the source code under a license compatible with GPLv3. COMMERCIAL VERSION: If you want to use the Haytham in a closed source commercial product, you must purchase the license. Please contact the contract adviser at IT University of Copenhagen(firstname.lastname@example.org).
We've Moved! Please visit us on Github for the latest GPSTk developer updates and binary releases. https://github.com/SGL-UT/GPSTk
CUDA-enabled machine learning library for recurrent neural networks
CURRENNT is a machine learning library for Recurrent Neural Networks (RNNs) which uses NVIDIA graphics cards to accelerate the computations. The library implements uni- and bidirectional Long Short-Term Memory (LSTM) architectures and supports deep networks as well as very large data sets that do not fit into main memory.
SpecTools - an OpenSource software package for quant. spectra analysis
Automated Quantitative Spectroscopic Analysis Combining Background Subtraction, Cosmic-Ray Removal and Peak Fitting programmed in LabVIEW. Current version 1.1.0. Binaries and source available.
The simulator is released under the terms of an academic, non-commercial use license. Please read the license agreement in case of doubt.
ASP.NET MVC Based Portal CMS System to Create an Instant Website
DigiOz .NET Portal is a FREE web based portal CMS system written in ASP.NET MVC 5 in C# which uses a Microsoft SQL Database to allows webmasters to setup and customize an instant website for either business or personal use. List of Technologies used: - ASP.NET MVC 5 - Microsoft SQL Server - Bootstrap - HTML 5 - jQuery Demo Site: http://digioznetportal.digioz.net/ Source Code: https://sourceforge.net/p/digioznetportal/codenew/ci/master/tree/ Installation Instructions: https://sourceforge.net/p/digioznetportal/wiki/Home/ Help Wanted: If you are a developer, and wish to join the project, please email us at email@example.com.
XNavigator is a Virtual Earth browser and viewer for http://osm-3d.org
XNavigator is the online viewer for the OpenStreetMap Globe at http://osm-3d.org and much more. It is an interactive 3D viewer and integrated client for exploring virtual city and landscape models. A wide range of interaction and navigation possibilities makes it easy to visualize and analyze very detailed virtual urban environments. XNavigator is the first application that supports the Web3DService (W3DS) service interface.
TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
Analysis of Raman spectra and spectroscopy data.
Raman Tool Set has been developed as a user-friendly free software for processing and analysis of Raman spectra and spectroscopy data. RamanToolSet offers the following functions for processing: - scaling spectra - offset spectra - cut spectra - averaging spectra - smoothing spectra - normalizing spectra - background subtraction - polynomial subtraction The following analytical tools have been implemented: - Principal Component Analysis (PCA) - Clustering analysis - Extended Multiplicative Signal Correction (EMSC) analysis The following mapping tools have been implemented: - Producing single spectra files from Renishaw, Witec and Horiba mapping files (.txt) - Mapping the single spectra so imported from Renishaw, Witec or Horiba files - PCA is performed over mapping spectra and PCA-Scores are mapped - ICA is performed over mapping spectra and ICA-coefficients are mapped - Clustering analysis is performed over mapping spectra and Clusters are mapped
Simox has moved to gitlab. Please update your URLs: https://gitlab.com/Simox/simox A platform-independent robot simulation, motion and grasp planning toolbox consisting of three modules: VirtualRobot to simulate and visualize robots, Saba the sampling-based motion planning library and GraspStudio for grasp planning.