The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.
Calc is arbitrary precision C-like arithmetic system that is a calculator, an algorithm prototyper and mathematical research tool. Calc comes with a rich set of builtin mathematical and programmatic functions.
The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. More information can be found at http://rdp.cme.msu.edu/.
Ctrax is a machine vision program for estimating the positions and orientations of many walking fruit flies, maintaining their individual identities over long periods of time with minimal supervision, and on average for 1.5 fly-hours automatically.
A graphical interface for solving exterior ballistics problems, based on the excellent GNU exterior ballistics library. This software generates valid 3-DOF solutions to small arms trajectories, including wind and atmospheric corrections.
Dynamics of quantum systems, controlled by external fields
WavePacket is a program package for numerical simulation of quantum-mechanical wavepacket dynamics for distinguishable particles. It can be used to solve one or more (i.e. coupled channels) time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations. Optionally accounting for the interaction with external electric fields within the semiclassical dipole approximation, WavePacket can simulate modern experiments using ultrashort light pulses in photo-induced physics or chemistry, including quantum optimal control. The graphical capabilities allow visualization 'on the fly', including Wigner transforms to phase space. A description of WavePacket can be found in our manuscript at http://dx.doi.org/10.1016/j.cpc.2016.12.007. For examples / movies, see also the Wiki pages of the WavePacket main project. First established in 2004, the present Matlab version is in a stable, mature state. Further development mainly by Burkhard Schmidt at Free University Berlin
UPDATE: Chromium is no longer updated or maintained. The project is frozen. Chromium is a flexible framework for scalable real-time rendering on clusters of workstations, derived from the Stanford WireGL project code base.
Implementations for the Revised Report language
This project offers open source implementations for UNESCO/IFIP's Algol 68 (the Revised Report language). The project offers two implementations: Implementation 1 is Algol68G: a recent checkout hybrid compiler/interpreter by Marcel van der Veer, supporting arbitrary arithmetic, partial parametrisation, complex numbers, POSIX threads, GNU plotutils, GNU scientific library, curses, sound, TCP sockets, RegEx and PostgreSQL. Inplementation 2 is algol68toc, a port by Sian Mountbatten of the vintage Algol68RS (UK Defense Research Agency) compiler. The implementation emits C code.
FREESECS is an open-source project for SEMI SECS standards. The software is compiled with GNU autotools/GCC and runs on Linux, MacOS X, NetBSD. See http://opensecs.sourceforge.net
Open source steam property routines in C. Implements the IAPWS-IF97 steam tables from the International Association for the Properties of Water and Steam. Includes two-way property solvers and test suite. Can be used from C/C++, Fortran, Python, LabVIEW, Octave and ASCEND.
a free cross platform precise unit converter, supports 5300+ units
The NC is a free, open source, cross platform software in order to convert units. It converts numbers with a precision of up to 1000 significant figures. It supports more than 5300 units in 94 categories. It has been localized in 10 languages.
ORSA is an interactive tool for scientific grade Celestial Mechanics computations. Asteroids, comets, artificial satellites, Solar and extra-Solar planetary systems can be accurately reproduced, simulated, and analyzed.
your weatherman without the man
A lightweight, customizable OS X menubar app to display weather and forecast conditions for virtually unlimited locations. This easy-to-use weather client interfaces with five weather sources to bring you weather at your fingertips. The Classic version is like a classic car - restored to its former glory, polished, and enhanced. Runs on all Mac computers with Intel processors! Visit the original project for some legacy background as well as Ed's rewrite in the Swift language. <https://sourceforge.net/projects/heat-meteo/>
Parametric MRI: T1 mapping, T2 mapping, T2* mapping
A flexible tool for medical research in magnetic resonance imaging (MRI) to generate parametric images (maps) from multiple types of pulse sequences (IR-prepared, Look-Locker, and MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping).
OOoLatex is no more maintained. Please consider using TexMaths (http://roland65.free.fr/texmaths/) OOoLatex is a set marcos designed to provide latex support into OpenOffice. Complex equations can be inserted as images, the latex code is saved into the image attribute while simpler equations are expanded into symbol characters to be inserted as text.
Digital Circuits Design and Simulation
Digital Logic Design is a Software tool for designing and simulating digital circuits. It provides digital parts ranging from simple gates to Arithmetic Logic Unit. In this software, circuit can easily be converted into a reusable Module. A Module may be used to built more complex circuits like CPU. The circuit working can be analyzed by using output parts like LEDs, Seven Segment Display and Digital Oscilloscope etc. provided in the software. This Software may be used by professionals, hobbyists and students alike. The teachers may incorporate this software in their courses like Digital Logic and Computer Design, Computer Architecture, Computer Organization and Embedded Systems. In this software, a circuit may be designed using graphical components or may be entered as Sum-of-Product Boolean form.
Mathematics formula renderer for Microsoft Word. Easy to use and really fast + Mathematics drawing toolbar for Microsoft Word + Math exercices storage Database for Microsoft Access. Available in French and English!!!
Explicit/Impicit Finite Element Program with linear/nonlinear, elastic/hyperelastic/hypoelastic/plastic/visco, contact,thermal, fluid capabilities. h/p refinements. Parallel/Distributed solvers available. No shell elements but has 2D beams, trusses.
Generic data-assimilation toolbox written in java, with native (c and fortran) libraries for high performance computing. Provides tools to couple to your own model and a wide range of algorithms, ranging from parameter calibration to Kalman filters.
NMR spin dynamics simulation
Insensitive (Incredible Nuclear Spin EvolutioN SImulation Tool Intended for Visual Education) is an application to simulate the NMR experiment based on the quantum mechanical density matrix formalism. It is available for Mac OS X 10.6 and above and iOS 5.1.1 and above. Please refer to the paper published in Concepts In Magnetic Resonance, 2011, 38A (2), 17-24.
Open-source cross-platform spectrometer device driver
SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP/7/8), MacOSX, and Linux (x86/x64/ARM).
XMOS based, USB2 audio card, low power consumption, small form factor, 8 synchronous input channels and 4 stereo output channels.
CoDeSys V3 MQTT library
Library to Publish and Subscribe to an MQTT-Broker. - Compatible with PLC's using CoDeSys V3. - Easy to use Function block - Usable for IOT-Projects Dependencies: - CAA DTUtil Extern V18.104.22.168 - CAA Memory V22.214.171.124 - SysSocket23 V126.96.36.199 Documentation and Codesamples: codesys-mqtt-library.sourceforge.net V188.8.131.52: Subscribe to topics V184.108.40.206: Last Will and Testament Message can be retained in Broker V220.127.116.11: Last will and Testament functionality V18.104.22.168: Stability improvements V22.214.171.124: Authentication with username and password V126.96.36.199: Connection to Web-addresses Function block: FB_MQTTClient Library: MQTT_Client.library Namespace: MQTT_Client
Niche Analyst (NicheA) was developed based on the BAM framework which allows users to create virtual spaces and virtual species, and to analyze ecological niches in both multivariate environmental and geographic spaces, linking views of the niche in the two spaces. The unique functionality in NicheA, not available in other software programs, is estimating Grinnellian niches of species based on environmental variables and occurrence records, but with a clear focus on fundamental ecological niches. NicheA can display ecological niches; calculate their shape, density, location, and other attributes; and quantify similarity among multiple niches.
RNA coding potential assessment tool
Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC , PhyloCSF and RNACode ). This is because most previously identified transcripts including protein coding RNA and short, housekeeping/regulatory RNAs such as snRNAs, snoRNA and tRNA are highly conserved. While still very useful, these approaches have several limitations: Most lncRNAs are less conserved and tend to be lineage specific which greatly limit the discrimination power of alignment-based methods. For example, of 550 lncRNAs detected from zebrafish, only 29 of them had detectable sequence