Open Source Scientific/Engineering Software - Page 9

Google Optimization Tools, also known as OR-Tools is an open-source, fast and portable software suite for solving combinatorial optimization problems. These encompass problems in vehicle routing, flows, integer and linear programming, and constraint programming. This suite contains a number of solvers, namely: a constraint programming solver; a linear programming solver; wrappers for commercial solvers (like Gurobi or CPLEX) and other open source solvers (SCIP, GLPK, etc.); among others. OR-Tools is written in C++, but comes with wrappers for Python, C# and Java. Once you model your problem in your preferred programming language, you can then use any of OR-Tools’ available solvers. OR-Tools is an award-winning project, having won three gold medals in the 2020 MiniZinc Challenge, the international constraint programming competition.

Q-CTRL Open Controls is an open-source Python package that makes it easy to create and deploy established error-robust quantum control protocols from the open literature. The aim of the package is to be the most comprehensive library of published and tested quantum control techniques developed by the community, with easy-to-use export functions allowing users to deploy these controls on.

A free and unlimited API for Google Translate. The language in which the text should be translated. Must be one of the codes/names (not case sensitive) contained in languages.js. Auto language detection, spelling correction, language correction. Fast and reliable – it uses the same servers that translate.google.com uses.

PerlPrimer is a GUI application written in Perl that designs primers for standard PCR, bisulphite PCR and Real-time PCR (QPCR). It aims to automate and simplify the process of primer design.

JUNG provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. New version now available on GitHub: https://github.com/jrtom/jung/releases/tag/jung-2.1

OpenSeaMap's goal is to add nautical and tourism information a sailor could be interested in to OSM (OpenStreetMap) and to present it in a pleasing way. Those include beacons, buoys and other seamark and port information.

Software for sustainability assessment, highly modular; initially focused on Life Cycle Assessments.

OpenOPC for Python is an easy to use OPC (OLE for Process Control) library for use with the Python programming language. The project includes a Windows gateway service allowing non-Windows clients to also access OPC-DA calls.

KLatexFormula is an easy-to-use graphical application for generating images (that you can drag and drop, copy and paste or save to disk) from LaTeX equations.

OpenCPN: A concise ChartPlotter/Navigator. A cross-platform ship-borne GUI application supporting * GPS/GPDS Postition Input * BSB Raster Chart Display * S57 Vector ENChart Display * AIS Input Decoding * Waypoint Autopilot Navigation

Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes. THE LATEST VERSION IS AVAILABLE ON GITHUB

The foam-extend project is a fork of the OpenFOAM® open source library for Computational Fluid Dynamics (CFD). The goal of this project is to integrate community contributions to the foam-extend CFD simulation toolbox. It is an open project welcoming and integrating contributions from all users and developers.

These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM).

A cross platform Python frequency scanning GUI for USB TV dongles, using the OsmoSDR rtl-sdr library. In other words a cheap, simple Spectrum Analyser. More information can be found at: http://eartoearoak.com/software/rtlsdr-scanner An installer and standalone versions for Windows are located here: https://github.com/EarToEarOak/RTLSDR-Scanner/releases Sources are available on GitHub: https://github.com/EarToEarOak/RTLSDR-Scanner ** The up to date installer is no longer maintained on this site and can now be found at https://github.com/EarToEarOak/RTLSDR-Scanner/releases **

This emulator is capable of providing a faithful replication of the HP48. It also has a debugger for the saturn processor.

Euler is a powerful all-in-one numerical software and includes Maxima for seamless symbolic computations. Euler supports Latex for math display, Povray for photo-realistic 3D scenes, Python, Matplotlib and C for scripting, and contains a full programming language. Features include libraries for numerical algorithms, optimization, plotting in 2D and 3D, graphics export, a complete help system, tutorials and examples. Euler runs in Windows natively, or in Linux via Wine. It is completely free of royalties. The source is licensed under GPL.

Msieve is a C library implementing a suite of algorithms to factor large integers. It contains an implementation of the SIQS and GNFS algorithms; the latter has helped complete some of the largest public factorizations known

Minsky brings system dynamics and monetary modelling to economics. Models are defined using flowcharts on a drawing canvas (as are Matlab's Simulink, Vensim, Stella, etc). Minsky's unique feature is the "Godley Table", which uses double entry bookkeeping to generate stock-flow consistent models of financial flows. Minsky is good for demonstrating mathematics too, with the most "math-like" interface in system dynamics. Sign up to Minsky's Patreon page (for as little as $1 a month) at https://www.patreon.com/hpcoder/. This creates a user community, which SourceForge doesn't facilitate. Full changes shown here: https://minsky.sourceforge.io/changelog.htm

DRC generates digital room correction FIR filters to be used within HiFi systems in conjunction with real time convolution engines like BruteFIR.

This software implements the IEC60870-5-104 protocol (client side) for substation data acquisition and control via tcp/ip network using the QT UI Framework. It can be compiled on Linux and Windows platforms. It's possible to poll and view data from the remote system (RTU) and also send commands. >>> Have a look also at my new SCADA project here: https://github.com/riclolsen/json-scada

This is an implementation of post-process phonon analyzer, which calculates crystal phonon properties from input information calculated by external codes, e.g., first-principles calculation code.

Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support from Claudia Adams Barr Program in Innovative Basic Cancer Research and NIH/NHGRI to develop MAGeCK.

OSGeoLive is a self-contained bootable DVD, USB thumb drive or Virtual Machine based on Lubuntu that allows you to try a wide variety of open source geospatial software without installing anything. It is composed entirely of free software, allowing it to be freely distributed, duplicated and passed around. It provides pre-configured applications for a range of geospatial use cases, including storage, publishing, viewing, analysis and manipulation of data. It also contains sample datasets and documentation.

An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.

TexGen is a geometric textile modelling software package to be used for obtaining engineering properties of woven textiles and textile composites. Citing TexGen We would be grateful if you could acknowledge use of TexGen where appropriate and suggest using one of the following references: L P Brown and A C Long. "Modelling the geometry of textile reinforcements for composites: TexGen", Chapter 8 in "Composite reinforcements for optimum performance (Second Edition)", ed. P Boisse, Woodhead Publishing Ltd, 2021, ISBN: 978-0-12-819005-0. https://doi.org/10.1016/B978-0-12-819005-0.00008-3 Lin, H., Brown, L. P. & Long, A. C. 2011. Modelling and Simulating Textile Structures using TexGen. Advanced Materials Research, 331, 44-47. To reference version 3.13.0 please use: Louise Brown, mike-matveev, & georgespackman. (2023). louisepb/TexGen: TexGen v3.13.1 (v3.13.1). Zenodo. https://doi.org/10.5281/zenodo.8221491