The intent is to create a sort of virtual 3D environment representing the exact application state in real time of common Java server application, as web application or client/server application too.
alinks is a set of POJO describing pedigree graphs.
This library provides an Opensource ATPG API to build your programs on. The library implements a lot of template c++ classes and functions that provide Combitional/Sequential logic simulation, and fault simulation functionality(semi-PROOFS).
Coding convenient Aero & Astro functions into one easy to use package. From rocket engine design, to flight and space dynamics.
This project is result of a challenge "creating a fractals generator by using only C++ and Qt", AiFractals is based on Qt Script and you can enjoy by generating your custom fractals =) by your own algorithms (Qt Script)
Albion is a digital document archive presentation package. Features include a searchable database, an integrated spell checker, and automatic thumbnail generation. As native Perl as possible, the database/photos/search-function can be delivered on CD!
Symbolic Algebra using Perl
Algorithm::MatchingModel is a perl library for running match simulations and statistics for two-sided matching problems. It includes classes for a preference factory, algorithm plug-ins, and gathering statistics between rounds.
An intuitive molecular editor and visualization tool
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture.
A C++ library for Bayesian computation, including a collection of more generally-applicable utilities.
A Perl module that provides methods for retrieving each and every field from a standard SwissProt file.
Bobware tool suite is a set of small EDA tools which are useful in the design of integrated circuits. The suite contains a perl/tk script for region planning large ASICs (application specific integrated circuits.)
Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
CAMERA is a research environment and repository for metagenomic data
CODD is a tool for creating and analyzing statistical measures of "developer involvement" in free software projects.
The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects in OBO, OWL, and other commonly used ontology representation
A Perl object-oriented library for plotting graphs with Gnuplot.
CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.
The project will provide a Cocoa framework to interface OpenGL in a more OO-fashioned style. It is not meant to be the fastest code possible, nor to leverage all the power of OpenGL, but to give developers a easy way to start working in 3D
Numerically estimate an efficiency of code construction algorithms. Randomly generate n binary words of length m with minimum Hamming distance d and create a prefix code (= retrieval tree) from them. Based on PhD work.
The Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes.
Is an Open Source Uchrony, analyzing information in the nexus dimension. From Hong Kong to Siberia, this first book is the starting point of an utopia in direct reference to History, evolving within a complex 5-degree social network.
Testcalc is a CGI-based calculator for diagnostic test characteristics written in Perl that displays results both numerically and graphically.
The Disease Ontology has moved to Github. New project page: https://github.com/DiseaseOntology Disease Ontology is a stuctured controlled vocabulary originally based upon and mapped to medical billing codes. The goal of this ontology is to create a comprehensive hierachical controlled vocabulary to represent subsumptive disease relationships.
Utilize Java to create an application capable of massivly parallel operations. Application will be targeted as a Napster Clone, with the additional capability of downloading projects which are seeking computer time.