psignifit is a toolbox to fit psychometric functions and test hypotheses on psychometric data. This is version 3 which will now predominantly support python.
OpenM++: open source microsimulation platform
OpenM++ is an open source microsimulation platform inspired by and compatible with Modgen. OpenM++, compared to its closed source predecessor Modgen, has advantages like portability, scalability and open source. It is not a copy of Modgen, but a new, functionally equivalent implementation of the publicly available language specification.
A C++ library for principal component analysis
libpca is a C++ library for principal component analysis and related transformations. It comes with example and unit tests. libpca is successfully tested on Linux and MacOSX using g++ (>=4.6), clang++ (>=3.2), and icc (>=14.0). libpca requires Armadillo (>=3.2.4) which can be obtained as a pre-compiled package on most distributions or directly from http://arma.sourceforge.net. libpca is being developed by Christian Blume. Contact Christian at firstname.lastname@example.org for any questions or comments.
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values (possibly obtained from VEGAS or GATES) and outputs pathway gene sets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * IMPORTANT NOTE: -> PLEASE MOVE OR MAKE A COPY OF 'DATA' FOLDER INTO YOUR INTENSIVE TEST FOLDER (I.E. LINUX OR MAC OR WINDOWS SPECIFIED FOLDER) TO ALLOW THE PROGRAM TO FIND THE PREDESIGNED DATA. * UPDATE NOTE: -> Jan-8-2018: minor output format update for all versions -> Aug-4-2017: minor bugs fixed: i/o bugs do not load input from GO and KEGG radio options -> Apr-3-2017: MacOSX command-line version is added. It also provides the PPI net summarization -> Mar-31-2017: Linux and Windows command-line versions now provide the PPI net summary results (except the net visualization)
BigBang/Horizon is a proteomics data analysis pipeline with focus on the shotgun LC/MSMS workflow.
test *only* 1) nr3, Poisson distribution 2) mixture model