Open Source and data mining software
ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats.
PHP package for statistical functions
We aim in Al-Kashi project to provide a rich PHP package full of statistical functions useful for online business intelligent and data mining, possible applications may include an online log file analysis, Ad's and Campaign statistics, or survey/voting results on-fly analysis.
Interactive scientific graphing and data analysis software.
Alpha Plot can generate different types of 2D and 3D plots (such as line, scatter, bar, pie, and surface plots) from data that is either imported from ASCII files, entered by hand, or calculated using formulas. The data is held in spreadsheets which are referred to as tables with column-based data (typically X and Y values for 2D plots) or matrices (for 3D plots). The spreadsheets as well as graphs and note windows are gathered in a project and can be organized using folders. The built-in analysis operations include column/row statistics, (de)convolution, FFT and FFT-based filters. Scripting Console support in-place evaluation of mathematical expressions and scrtipting interface to ECMAScript like dynamic scripting language(java script). The GUI of the application uses the Qt toolkit. Periodic test builds are available here http://alphaplot.sourceforge.net/test-build.html
Blueprint XAS is a Matlab-based suite designed for the processing and analysis of near-edge x-ray absorption spectroscopy (XAS) data. The suite is designed primarily to assist users in exploring reasonable fit solutions while minimizing user bias.
The purpose of this program is to provide the user with a convenient algorithm for automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain event-related brain potential (ERP). www.jan-wessel.de
Un semplice programma in Java per il calcolo combinatorio
Un piccolo tool in java per effettuare calcoli combinatori come: -Disposizioni -Permutazioni -Combinazioni Calcolo Combinatorio Java
Suite of community detection algorithms based on Modularity
- MixtureModel_v1r1: overlapping community algorithm , which includes novel partition density and fuzzy modularity metrics. - OpenMP versions of algorithms in  are available to download. - Main suite containing three community detection algorithms based on the Modularity measure containing: Geodesic and Random Walk edge Betweenness  and Spectral Modularity . Collaborator: Theologos Kotsos.  M. Newman & M. Girvan, Physical Review, E 69 (026113), 2004.  M. Newman, Physical Review E, 74(3):036104, 2006.  B. Ball et al, An efficient and principled method for detecting communities in networks, 2011. The suite is based upon the fast community algorithm implemented by Aaron Clauset <email@example.com>, Chris Moore, Mark Newman, and the R IGraph library Copyright (C) 2007 Gabor Csardi <firstname.lastname@example.org>. It also makes of the classes available from Numerical Recipies 3rd Edition W. Press, S. Teukolsky, W. Vetterling, B. Flanne
CORe microBiome Analysis Tools
Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.
Statistical data analysis
Programa multiplataforma de libre distribución para el análisis estadístico y epidemiológico de datos. Free distribution cross-platform program for statistical and epidemiological analysis of data. Sitio web: http://www.sergas.es/Saude-publica/EPIDAT Souceforge: https://sourceforge.net/projects/epidat/ Wikipedia: https://es.wikipedia.org/wiki/Epidat
Excel's Interface to R
Excelsi-R is an Excel add-in that allows Excel spreadsheets to harness the power of the R statistical language by connecting to a running R process. R does not need to be installed on the computer running Excel, but it does require access to an R instance running Rserve (which can be on a remote computer). It supports incorporating R plots and graphs in an Excel workbook.
Food Reconstruction Using Isotopic Transferred Signals
Description IMPORTANT NOTICE: The release of FRUITS (version 2.1.1) has now been made available. This will be kept as a beta version during the coming months. Feedback on bugs or suggested additions are appreciated. FRUITS is a Bayesian mixing model for diet reconstruction using isotopic data.
Map friend connections between any two Facebook users!
* v2.0.1 - Minor bug fixes & improved user caching. * After the initial success of version 1.0 and many requests from the community, v2.0 of the Facebook Friend Mapper is now here! Speed and efficiency improvements have led to search times being reduced by up to 22 times with custom number of threads. Results are shown with a impressive and interactive data visualization. Improved user friendly interface and experience. If you have any queries please get in touch. * Facebook Friend Mapper * The only application finding friend links between two Facebook users to an unlimited number of steps. * Instructions 1. Connect to the internet. 2. Enter your account details 3. Enter the usernames of the Facebook users you wish to map a connection between. 4. Press 'Start' button. 5.Wait for search to finish. This could take up to 1 hour and depends on internet speed and processing power. 6. View connections between the specified first and second Facebook users on the map.
GNU Gama builds for Windows from Visual Studio 2017
GNU Gama is a project dedicated to adjustment of geodetic networks. GNU Gama builds is focused on distributing native Windows executables from Visual Studio 2017. If you are interested in a full Qt based GUI for GNU Gama project, visit our twin project at https://sourceforge.net/projects/gnu-gama-q2 For Cygwin builds, please go to https://sourceforge.net/projects/gamawin/
Gaussian Process Model Fitting
Gaussian Process model for fitting deterministic simulator output. Establish efficient and reliable likelihood optimization through hybridized DIRECT-BFGS and multi-start BFGS algorithms. Programming Language: Matlab.
All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit https://sourceforge.net/projects/scixminer/ to download the newest version. The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal.
ASYMPTOTICALLY RECURSIVE DATA COMPRESSION (v0.0.0.1)
ASYMPTOTICALLY RECURSIVE DATA COMPRESSION (v0.0.0.1)
Java library of statistical distribution
A Java package that provides routines for various statistical distributions. Based on R version 2.14.1 (continuously updated; current as of R v3.3.0). The major difference is that JDistlib is thread safe. The library contains the density (pdf), cumulative (cdf), quantile, and random number generator (RNG) routines of the following distributions: Ansari, Beta, Binomial, Cauchy, Chi square, Exponential, Fisher's F, Gamma, Geometric, Hypergeometric, Kendall, Logistic, Log normal, Negative binomial, Noncentral beta, Noncentral chi square, Noncentral f, Noncentral t, Normal, Poisson, Sign Rank, Spearman, Student's T, Tukey, Uniform, Weibull, Wilcoxon, and many more. Normality tests, such as: Kolmogorov-Smirnov, Anderson-Darling, Cramer-Von Mises, D'Agostino-Pearson, Jarque Bera, Kolmogorov-Lilliefors, Shapiro-Francia, Shapiro-Wilk. And many others.
JStats is a Java application/applet for statistical testing.
JStats is a small but powerful Java application/applet for conducting statistical tests. The following tests are supported: * Parametric tests: T-test, ANOVA, Repeated Measures ANOVA * Non-parametric tests: Wilcoxon Rank-Sum, Wilcoxon Signed-Ranks, Kruskal-Wallis, Friedman * Check if datasets are normally distributed: Jarque-Bera, Shapiro-Wilk * Check if datasets have equal variances: F-test, Bartlett's test, John, Nagao and Sugiura's test * Correlation: Correlation coefficient, Spearman Rank correlation, linear regression * Confidence intervals test * Outliers: Generalized Extreme Studentized (ESD) test, outliers in ANOVA The latest version is available as applet on http://aiguy.org/Statistics.html
Kaplan-Meier for Windows
KMWin (Kaplan-Meier for Windows) is a convenient tool for graphical presentation of results from Kaplan-Meier survival time analysis. The programme is based on the statistical software environment R and provides an easy to use graphical interface. As an introduction, see http://dx.plos.org/10.1371/journal.pone.0038960#s2.
Automatic Time Series Analysis with Stationary VAR Models
LDT is designed for automatic time-series analysis. Current version focuses on stationary vector autoregressive models (VAR) and the related analyses such as forecasting and Granger causality. See the following paper for an application: See http://papers.ssrn.com/sol3/papers.cfm?abstract_id=2818213
Parallel pairwise correlation computation on Intel Xeon Phi clusters
The first parallel and distributed library for pairwise correlation/dependence computation on Intel Xeon Phi clusters. This library is written in C++ template classes and achieves high speed by exploring the SIMD-instruction-level and thread-level parallelism within Xeon Phis as well as accelerator-level parallelism among multiple Xeon Phis. To facilitate balanced workload distribution, we have proposed a general framework for symmetric all-pairs computation by building provable bijective functions between job identifier and coordinate space for the first time.
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed and maintained by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health. We thank the support from Claudia Adams Barr Program in Innovative Basic Cancer Research to develop MAGeCK.
A program to calculate and represent the Mandelbrot set
This project is a C++ program to calculate and represent graphically the Mandelbrot fractal set, and/or the corresponding Julia sets, according to the seed Z0 given by the user as input. The user disposes of a graphical interface to control the program and modify conveniently some parameters, like the XY-scales, the XY map area, the Julia seed for the complex series iteration of Z(n+1)=Z(n)^2+a, being Z(0)=(X0,Y0) the seed, and "a in XY" the points to be calculated. The user can enter (among other parameters) the desired convergence-radius R for the series, and/or the number of maximal iterations N for the generator-equation in Z.
A set of Matlab functions which compute effect size statistics and (exact) confidence intervals for a wide range of data analysis situations, including two-sample-, oneway-, twoway- and contrast analyses as well as categorical data in tables.