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  • Monitor your Cisco ASA like an expert with Solarwinds® Network Insight™ for Cisco® ASA, a feature of NPM and NCM. Monitor your Cisco ASA like an expert with Solarwinds® Network Insight™ for Cisco® ASA, a feature of NPM and NCM. Icon
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  • SDE Toolbox

    A MATLAB package to simulate sample paths of the solution of a Itô or Stratonovich stochastic differential equation (SDE), compute statistics and estimate the parameters from data. A note of caution: SDE Toolbox is no more developed but it's still downloadable. Its inferential capabilities can be considered surpassed (at best). Actually the parameter estimation methods were already far from the state-of-art when the project began in 2007 (!). The considered implemented parametric and non-parametric Monte Carlo likelihood methods were chosen for their ability to treat both one-dimensional and multivariate SDE systems, although the quality of the inferential results can't match those obtained using more advanced techniques. Nevertheless the toolbox capabilities to simulate numerical solutions of SDE systems are still valid and can serve as a useful starting point to those willing to simulate stochastic dynamical models easily.

    Downloads: 8 This Week Last Update: See Project
  • Immutable Sparse Wave Trees (WaveTree)

    Realtime bigdata tool for bit strings up to 2^63 based on AVL forest

    Realtime bigdata tool at the bit level based on immutable AVL forest which can be run in memory or, in future versions, as a merkle forest like a blockchain. Main object is a sparse bit string (Bits) that efficiently scales up to 2^63 bits normally compressed as forest has duplicated substrings. Bits objects support reading bit, byte, short, int, or long (Java primitives) at any bit index in 64 bit range. Example: instead of building a class to hold a header and then data, represent all of that as Bits, subranges of them, and ints for sizes of its parts. Expansion ability for other kinds of compression, since Bits is a Java interface. Main functions on bits are substring, concat, number of 0 or 1 bits, and number of bits (size). All those operations can be done millions of times per second regardless of size because the AVL forest reuses existing branches recursively. Theres a scalar (originally for copy/pasting subranges of sounds) and a bit Java package. Sparse n dimensional matrix.

    Downloads: 0 This Week Last Update: See Project
  • knowceans

    Utility classes from maps to search engine to random samplers

    Collection of several multi-purpose Java libraries. --- knowceans-tools = collection of Java utility classes. --- Highlights: --- org.knowceans.util: IndexQuickSort, TableList: apply order of one array/list to others +++ Vectors, ArrayUtils: array convenience +++ RandomSamplers, CokusRandom, ArmSampler, Densities: random sampling and distributions +++ Arguments: command line parser +++ StopWatch, Which, ExternalProcess: runtime stuff +++ ParallelFor: OpenMP workalike +++ PatternString, NamedGroupRegex: regex convenience --- org.knowceans.corpus: CorpusSearcher: full-text search engine +++ LabelNumCorpus: svmlight corpus storage and filtering +++ NIPS corpus with text, authors, labels and citations --- org.knowceans.map: InvertibleHashMultiMap, BijectiveHashMap: implement n:m and 1:1 relations. --- Other libs: knowceans-arms = port of the Adaptive Rejection Metropolis Sampler (ARMS) for arbitrary distributions +++ lda-j = port of lda-c, implementing Latent Dirichlet Allocation (LDA)

    Downloads: 3 This Week Last Update: See Project
  • Speech Research Tools

    Software for speech research. It includes programs and libraries for signal processing, along with general purpose scientific libraries. Most of the code is in Python, with C/C++ supporting code. Also, contains code releases corresponding to publishe

    Downloads: 0 This Week Last Update: See Project
  • Hrothgar Parallel LM/MCMC Minimizer

    A versatile MCMC and downhill optimization engine

    Hrothgar is a parallel minimizer and Markov Chain Monte Carlo generator by Andisheh Mahdavi of San Francisco State University. It has been used to solve optimization problems in astrophysics (galaxy cluster mass profiles) as well as in experimental particle physics (hadronic tau decays). It is probably adaptable enough to be applied to your merit function if you can write it in C.

    Downloads: 0 This Week Last Update: See Project
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  • Adaptive Gaussian Filtering Icon

    Adaptive Gaussian Filtering

    Machine learning with Gaussian kernels.

    Libagf is a machine learning library that includes adaptive kernel density estimators using Gaussian kernels and k-nearest neighbours. Operations include statistical classification, interpolation/non-linear regression and pdf estimation. For statistical classification there is a borders training feature for creating fast and general pre-trained models that nonetheless return the conditional probabilities. Libagf also includes clustering algorithms as well as comparison and validation routines. It is written in C++.

    Downloads: 5 This Week Last Update: See Project
  • SPIDR IDL Client

    Provides an API, which enables the Interactive Data Language (IDL) user (and developer) to incorporate Space Weather data and metadata resources from the Space Physics Interactive Data Resource (SPIDR) directly into an IDL application. Examples included.

    Downloads: 8 This Week Last Update: See Project
  • histman Icon

    histman

    Histogram Manager

    This program was designed to facilitate and accelerate expert’s evaluation of histogram similarity.

    Downloads: 0 This Week Last Update: See Project
  • HPCall

    Improved base-calling for homopolymer-sensitive next-gen data.

    The current software contains the implementation for the 454 pyrosequencing platform.

    Downloads: 0 This Week Last Update: See Project
  • MultiBase Calc framework Icon

    MultiBase Calc framework

    A multi-base calc framework

    This framework allows you to create your own Operators, Math Const and base, to process on any mathematical expression.

    Downloads: 0 This Week Last Update: See Project
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  • Community Detection Modularity Suite Icon

    Community Detection Modularity Suite

    Suite of community detection algorithms based on Modularity

    - MixtureModel_v1r1: overlapping community algorithm [3], which includes novel partition density and fuzzy modularity metrics. - OpenMP versions of algorithms in [1] are available to download. - Main suite containing three community detection algorithms based on the Modularity measure containing: Geodesic and Random Walk edge Betweenness [1] and Spectral Modularity [2]. Collaborator: Theologos Kotsos. [1] M. Newman & M. Girvan, Physical Review, E 69 (026113), 2004. [2] M. Newman, Physical Review E, 74(3):036104, 2006. [3] B. Ball et al, An efficient and principled method for detecting communities in networks, 2011. The suite is based upon the fast community algorithm implemented by Aaron Clauset <aaron@cs.unm.edu>, Chris Moore, Mark Newman, and the R IGraph library Copyright (C) 2007 Gabor Csardi <csardi@rmki.kfki.hu>. It also makes of the classes available from Numerical Recipies 3rd Edition W. Press, S. Teukolsky, W. Vetterling, B. Flanne

    Downloads: 0 This Week Last Update: See Project
  • NeXT [CoO]

    The qualifier of objects.

    This program is intended for classification of objects on the basis of the reference data, and also construction of resultant tables and diagrams. It urged to simplify a choice question in many aspects of life thanks to dynamism and high degree of adaptation under a task in view.

    Downloads: 0 This Week Last Update: See Project
  • VAPoRS

    VAPoRS

    VAPoRS stands for "Variable-dimensional Approximate Posterior for Relabeling and Summarization".

    Downloads: 0 This Week Last Update: See Project
  • NeXT

    Next - is the qualifier of objects. This program is intended for classification of objects on the basis of the reference data, and also construction of resultant tables and diagrams. It urged to simplify a choice question in many aspects of life thanks to dynamism and high degree of adaptation under a task in view.

    Downloads: 0 This Week Last Update: See Project
  • DyMMM

    Dynamic Multispecies Metabolic Modeling framework

    The Dynamic Multispecies Metabolic Modeling (DyMMM [dĭm]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework. Please use the following citation for bibliographical purposes: Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal. Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. Biotechnology and Bioengineering.

  • phcfM Icon

    phcfM

    R package for modelling anthropogenic deforestation

    phcfM is an R package for modelling anthropogenic deforestation. It was named after the REDD+ pilot-project 'programme holistique de conservation des forêts à Madagascar'. phcfM includes two main functions: (i) demography(), to model the population growth with time in a hierarchical Bayesian framework using population census data and Gaussian linear mixed models and (ii) deforestation(), to model the deforestation process in a hierarchical Bayesian framework using land-cover change data and Binomial logistic regression models with variable time-intervals between land-cover observations. The two functions use embedded Gibbs samplers written in C++ with the Scythe statistical library to reduce computational time.

    Downloads: 0 This Week Last Update: See Project
  • Event Study

    Event studies in several statistical packages

    Software to perform event studies in several statistical packages, such as SAS, Stata and R.

    Downloads: 0 This Week Last Update: See Project
  • Nen Icon

    Nen

    neural network implementation in java

    3-layer neural network for regression and classification with sigmoid activation function and command line interface similar to LibSVM. Quick Start: "java -jar nen.jar"

    Downloads: 2 This Week Last Update: See Project
  • Noisy Channel Simulator

    Demonstrate errors in transmission of a file over a noisy channel.

    This program was written to dimonstrate errors in transmission for a presentation on Claude Shannon's Noisy Channel Coding Theorem. It takes an input file, the probability of a bit being flipped, and, if specified, the size of the header of the file. The program was intended to take monochrome bitmap files as input, so that each bit refers to a pixel in the image and thus, it would be easy to see errors in the output file, as some of the pixels would be flipped; however, it will work on any input file.

    Downloads: 0 This Week Last Update: See Project
  • Novel Score Icon

    Novel Score

    Calculates the Type Token Ratio (Expressive Vocabulary) in any text.

    Novel Score will calculate an approximate TTR (Type Token Ratio) of any standard text. Simply copy and paste, then analyze. Novel Score will also get gather and rank said text's most commonly used words. This tool was originally built to analyze the word variance of different authors. To a certain extent, TTR is a measure of one's expressive vocabulary, and thus writing ability. However, take any results with a grain of salt.

    Downloads: 0 This Week Last Update: See Project
  • FRUITS Icon

    FRUITS

    Food Reconstruction Using Isotopic Transferred Signals

    Description IMPORTANT NOTICE: The release of FRUITS (version 2.1.1) has now been made available. This will be kept as a beta version during the coming months. Feedback on bugs or suggested additions are appreciated. FRUITS is a Bayesian mixing model for diet reconstruction using isotopic data.

    Downloads: 91 This Week Last Update: See Project
  • Excelsi-R

    Excel's Interface to R

    Excelsi-R is an Excel add-in that allows Excel spreadsheets to harness the power of the R statistical language by connecting to a running R process. R does not need to be installed on the computer running Excel, but it does require access to an R instance running Rserve (which can be on a remote computer). It supports incorporating R plots and graphs in an Excel workbook.

    Downloads: 0 This Week Last Update: See Project
  • libfgen

    Library for optimization using a genetic algorithm or particle swarms

    libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported.

    Downloads: 3 This Week Last Update: See Project
  • KMWin Icon

    KMWin

    Kaplan-Meier for Windows

    KMWin (Kaplan-Meier for Windows) is a convenient tool for graphical presentation of results from Kaplan-Meier survival time analysis. The programme is based on the statistical software environment R and provides an easy to use graphical interface. As an introduction, see http://dx.plos.org/10.1371/journal.pone.0038960#s2.

  • ARNU Icon

    ARNU

    Arredondamento de Números

    Sistema de Apoio Didático Profissional. ARNU - Arredondamento de Números. O aplicativo ARNU tem por objetivo auxiliar na resolução de cálculos de arredondamento matemático, abordados de forma técnica, entregando ao usuário um resultado didático e objetivo, o motivo e as normas utilizadas.

    Downloads: 0 This Week Last Update: See Project

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