Xplanet is a solar system simulator which calculates accurate positions for the major planets and satellites. It displays multiple bodies, eclipse shadows, and customizable labels and markers.
argument map editor for analyzing and visualizing complex debates
Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server.
Biogenesis is an artificial life program that simulates the processes involved in the evolution of organisms. It shows colored segment based organisms that mutate and evolve in a 2D environment. Biogenesis is based on Primordial Life.
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. QUAST computes a number of well-known metrics, including contig accuracy, number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and in the manual). A comprehensive analysis results in summary tables (in plain text, tab-separated and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one easy to navigate file. QUAST has an intuitive command-line interface and a detailed manual to help users run it and understand its output. Furthermore, the Lab started a Beta version of web-QUAST at http://quast.bioinf.spbau.ru/ which makes quality evaluation even more simple. QUAST and MetaQUAST (extension for metagenomic assemblies) papers were published in Bioinformatics.
A simple yet powerful mesh generator based on matlab/octave language, making finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows.
MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
xc3sprog is a suite of utilities for programming Xilinx FPGAs, CPLDs, and EEPROMs with the Xilinx Parallel Cable and other JTAG adapters under linux. Originally based on code written by Andrew Rogers (http://www.rogerstech.co.uk/ ).
MATSim is a framework for building multi-agent transport simulations. MATSim has moved to GitHub: https://github.com/matsim-org/matsim Source code and newer releases are now hosted at GitHub!
Panini is a visual tool for creating perspective views from panoramic and wide angle photographs. More than a pano viewer, more than a view camera, with features of both. For Linux/Unix, Win32, and Mac systems with OpenGL 2.0 + Nov. 2017: now hosted at https://github.com/lazarus-pkgs/panini
The aim of the project is to develop an open source iSCSI target with professional features, works well in enterprise environment under real workload, and is scalable and versatile enough to meet the challenge of future storage needs and developements.
A powerfull tool to work with math functions. At this stage of progress it's draw 2D graphs and 3D graphs of any function. Also have very easy to use calculator which can calculate complicate expressions.
PyQwt = FAST and EASY data plotting for Numerical Python and PyQt. PyQwt is a Python wrapper for the Qwt C++ class library which extends the Qt framework with widgets to display and control data for scientific and engineering applications. Please note: We moved RCS, future releases, BUGS to https://github.com/PyQwt
This repository is now frozen. The latest version of the RepRap project can be found at https://github.com/reprap.
Magstripper is a magnetic card reader and decoder that takes raw waveform information from a magnetic audio head (soldered directly to a mono audio jack) and processes it via a mic input. It also includes a multi-user door lock access control system.
A library and attached graphical and console based application to solve and design interlocking burr-type puzzles based on cubes, spheres, triangles and other units.
DRC generates digital room correction FIR filters to be used within HiFi systems in conjunction with real time convolution engines like BruteFIR.
Group Explorer is mathematical visualization software for the abstract algebra classroom. Users can explore dozens of finite groups (and morphisms among them) visually and interactively.
The Player Project: Player is a networked interface to robots and sensors. Stage and Gazebo are Player-friendly multiple-robot simulators. The software aims for POSIX compliance and runs on most UNIX-like OS's. Some parts also work on Windows.
The Mars Simulation Project is an open source Java project to create a simulation of future human settlement on the planet Mars. See https://github.com/mars-sim/mars-sim for code/issues/wiki
gpsim is an open sourced simulator for Microchip's PIC microcontrollers. It supports all three families of PICs: 12-bit, 14-bit, and 16-bit cores. See also gputils http://gputils.sourceforge.net/
This project contains weka packages of neural networks algorithms implementations like Learning Vector Quantizer (LVQ) and Self-organizing Maps (SOM). For more information about weka, please visit http://www.cs.waikato.ac.nz/~ml/weka/
easyrec is a recommender system that aims for easy integration of recommendations into web applications. It has a web based admin tool, and its recommendation engine is accessible through a REST API, providing methods like 'other users also bought'
Large-scale Atomic/Molecular Massively Parallel Simulator
LAMMPS is a classical molecular dynamics simulator designed for parallel machines. It can model atomic, polymeric, biological, metallic, or mesoscale systems using a variety of force fields and boundary conditions and is easy to modify or extend.
Navigation and monitoring system primarily intended for marine operation in small boats. OpenPilot aspires to provide the functionality found in a normal marine chart-plotter, for free. OpenPilot will run natively under both Windows and Linux.
GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.