Open Source Solid Modeling CAD
BRL-CAD is a powerful cross-platform constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing for rendering & geometric analyses, network distributed framebuffer support, image & signal-processing tools.
Cross-platform DICOM implementation
Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets.
A project to increase free Arabic fonts on Unix/Linux
Arabeyes is a Meta project that is aimed at fully supporting the Arabic language in the Unix/Linux environment. It is designed to be a central location to standardize the Arabization process. Arabeyes relies on voluntary contributions.
Portable Ubuntu Linux for Scientific Computing
Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated. https://sourceforge.net/projects/portable-linux/files/ Installation 1. Download the Wubi installer http://releases.ubuntu.com/saucy/wubi.exe 2. Install any flavor of Ubuntu. 3. Swap out the root.disk with the ones provided here. Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington
This project is the implementation of The Virtual Collaborative Environment (VCE) which supports clinical applications of 3D modeling in medicine. The system is based on three layer client-server architecture.
A simple command to convert calendar dates to julian dates. Quite useful in timing situations where you need elapsed time between dates. Also useful for astronomy applications.
Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.
Software to control a remote telescope via a web interface. Includes software needed to operate a motorized dome, telescope, and cameras.This project has been partially funded by a grant from the Northwest Academic Computing Consortium.
The METAR Repository or simply metarr is a web-mapping service, capable of gathering and visualizing METARs (meteorological aviation routine weather reports). So aeronautical weather information becomes browseable on a map, even for "METAR-illiterate"
The Global Change Public Health Web is an informative database of websites relating to global change and climate change.
The Open Translation Engine (OTE) is a web-based translation dictionary manager. The OTE allows a community of users to create and manage one or many translation dictionaries. The OTE is written in PHP and uses a MySQL database.
This was an UI course project. In this project we built an interface prototype of an online travel reservation system. This service was meant to revolutionize the travel idustry in several ways for occasional travelers as well as for large businesses.
CommonMap is an open source map project, forked from OpenStreetMap by a licence problem. CommonMap needs original softwares tuned for CommonMap. Most of software would be useful for any other open source map projects, too.
FreeMarket is a software package for running simple virtual prediction futures markets that uses the renowned PHP scripting language and MySQL database tools. It is designed for educational and medium-scale research applications.
RNA-Seq based gene prediction pipeline for fungal genomes
SnowyOwl is a gene prediction pipeline that uses RNA-Seq data to train and provide hints for the generation of Hidden Markov Model (HMM)-based gene predictions, and to evaluate the resulting models. The pipeline has been validated and streamlined by comparing its predictions to manually curated gene models in three fungal genomes, and its results show substantial increases in sensitivity and selectivity over previous gene predictions. Sensitivity is gained by repeatedly running the HMM gene predictor Augustus with varied input parameters, and selectivity by choosing the models with best homology to known proteins and best agreement to the RNA-Seq data. SnowyOwl has successfully predicted genes in 26 novel fungal genomes. The pipeline can be installed locally for high throughput and control over configuration. It can also be run on a remote server through a convenient web interface for occasional use.
TaxonGrab is an NLP (Natural Language Processing) solution written in PHP, which leverages systematic nomenclature rules that are used for taxonomic nomenclature in scientific publications.
The Tremani Neural Network allows you to build, train and employ neural networks in PHP. It is easy to use and set up, and does not rely on external software to be installed on your webserver.
Set of tools and libs for managing structured data in a very flexible way: Imp./Exp. ASCII, XML, SQL, PS, Tex/LaTex, RTF GUI: X-Windows, MS-Windows Interface to C++, DBs, Perl, PHP, Java, TCP/IP LISP-like interpreter written in C++ using C-LIB
The project wms2GO is designed to build a local executable WebGIS application out of pre-defined or manual selected WMS (OGC WebMapServices) of free map extract. Thus it is possible to use this application on a mobile device (e.g. a laptop) without any network access. Manuals for Installation and Setup have been added to the SVN. You can find them here: http://wms2go.svn.sourceforge.net/viewvc/wms2go/wms2go-help-1.0/ At the moment, they are only available in german, but this may change in the future. A demo client is published under: http://wms2go.dlz-it.de/
Abra stands for 'A brain extension'. The core idea is to create personal mappings onto information space and share those mappings. Ajax-enabled bookmarklet allows users to 'say anything about any URI', outputs RDFa. Has simple category-enabled CMS.
CABLE (Computer Algebra Based Learning and Evaluation) is an online mathematical assessment tool for use with an open source computer algebra system.
A portal project to produce a web based front end to a compute resource, such as a cluster, using PHP, mysql, apache and perl. The intent is to allow non-programmers to use complex programs through an intuitive web interface.
DOMjudge is an automated judge system for programming contests.
NOTE: DOMjudge has moved to www.domjudge.org and Github for all development. DOMjudge is an automated judge system to run programming contests. Both team and jury side interfaces are web based, with a command line submit tool available as well. It is written in PHP, shell-script and C/C++ and needs MySQL and a webserver.
DRINKS is a set of smart web-based widgets.