JReferences is a tool to store and retrieve bibliographic references from a file or MySQL database. It reads BibTeXML, DocBook XML and RIS type references, and can output these and BibTex. A bibtex like alternative is also provided for DocBook XML docu
Kathak is a Bangla text to speech synthesizer which can produce the speech from unicode bangla text input. We are developing the system based on Festvox framework.The Festival Speech Synthesis System was used as a base for developing Kathak.
The aim of MIEX (Metadata and Information Extractor from small XML documents) is to create a wrapper for the Stanford Parser, to extract and store metadata (syntactic structures, relationships among words...) from simple XML documents.
Chemiinformatics: ND qsar -- dimensions involved in biological activity are more than the tree dimensions our mind can easily perceive.
NIKS (Needle in a K-stack) - detection of mutations in NGS data
To get access to the code, please check it out with svn as described in the code section.
The aim of this project is the development of a flexible, multi-user, virtualization-enabled network emulator, using a cluster of general purpose (x86) machines. The emulator interface is web-based and uses the AJAX pattern.
Network Programming Interface Builder Create a rapid application development tool that researchers could easily use to create, maintain, and archive numerous parametric studies based on their computer simulation programs.
superseded by SgpDec http://sgpdec.sf.net Java implementation of the holonomy algorithm for the algebraic hierarchical decomposition of finite state automata.
POESIA= Public Opensource Environment for a Safer Internet Access an opensource Internet content filter (multimodal, mulitlingual) aimed for protection of youth (in schools...); partly funded by the European Commission
PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP.
Post-Transcriptional Exon Shuffling (PTES) Identification Pipeline
PTESFinder is a computational pipeline for identifying Post-transcriptional Exon Shuffling events from high-throughput RNAseq data. PTESFinder leverages the power of established RNASeq tools and systematically excludes all known classes of false positive structures by applying stringent filters designed to specifically target these false positives. PTESFinder compares alignment qualities of reads mapping to putative PTES structures with qualities of the same reads when mapped to genomic regions and canonically spliced transcripts. This approach increases the confidence in PTES supporting reads. Reads emanating from template-switching events are often characterised by large indels when aligned to the transcriptome. PTESFinder uses additional filters to exclude reads with ambiguous alignments around PTES exon-exon junctions, further increasing confidence in these supporting reads. PTESFinder identifies more PTES structures than other published methods whilst maintaining high specificity.
The Parallel Seismic Earth Imaging System (PSEIS) is designed for geophysical research and parallel processing of large datasets. Interoperation and emulation are used to leverage other seismic processing software, existing skills and infrastructure.
PepArML: An unsupervised, model-free, combining peptide identification arbiter for tandem mass spectra via machine learning.
PulsarHunter is a java based package for pulsar searching. It operates on a number of standard data formats. This package also includes the JReaper graphical candidate selection tool.
A collection of hacks to control your Roomba from your computer in C, Java, Perl and shell.
C++, Fortran, Java Linux, Windows/Cygwin Framework for Monte Carlo simulation of high-energy collisions
A service-oriented, single-source, Java integration server with virtual Service Stores(TM) that expose services via web services, HTTP and more. Service Flows provide process automation. Mainframe, database, email, web, soap & ftp adapters are included.
This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.
LibSeris is a set of common code for controlling the Seris class of inexpensive personal robots, also created by this project.
StateVis is a package that allows states (or groups) to create a browsable database of their Landsat holdings.
idyuts is \"I Dare You to Use This Shell\"; a pre-hibernate approach to replacing an ORM written with jython functors into a pure-Java language command pattern. The \"pipeline codegen artifacts\" are simple IoC templates, and trivial to adapt
TechnoForge aims to be a website operated for the purpose of fostering hardware development and technical documentation creation under Open-Source Initiative -approved licenses or other arrangements relating to hardwware and/or documentation development.
TreeBASE is a database and web front end that stores phylogenetic trees and the data matrices used to generate them. The current iteration comprises a complete rewrite of the schema and web layer, and will include a web services layer.
Uechi APM Web Server Performance Monitor Open Source
Uechi APM Web is an APM (Application Performance Management) Open Source Server Performance Monitor written and developed in Java and C # for all Linux and Windows platforms. The Uechi.APM.Web offers a complete resource for unlimited monitoring servers in real time. Have full control of the CPU consumption, memory, disk and network traffic. Communication is done via TCP Protocol Socket connection. More information, please visit: http://uechi.com.br/uechi-apm-web-eng/
A general purpose distributed hash table adapted for sequence analysis. This program searches for all maximal, exact unique n-mers from a given set of genomes. Originally, this program's primary use was to design resequencing microarrays.