OSI-Approved Open Source (1,050)
- GNU General Public License version 2.0 (618)
- GNU General Public License version 3.0 (126)
- GNU Library or Lesser General Public License version 2.0 (84)
- BSD License (81)
- Artistic License (76)
- Academic Free License (45)
- MIT License (27)
- GNU Library or Lesser General Public License version 3.0 (13)
- Apache License V2.0 (11)
- Apache Software License (11)
- Artistic License 2.0 (7)
- Affero GNU Public License (5)
- Mozilla Public License 1.1 (5)
- Open Software License 3.0 (4)
- Common Public License 1.0 (3)
- Creative Commons Attribution License (31)
- Public Domain (24)
- Other License (15)
- Linux (1,144)
Grouping and Descriptive Categories (743)
- All POSIX (434)
- OS Independent (281)
- All 32-bit MS Windows (109)
- OS Portable (74)
- All BSD Platforms (52)
- 32-bit MS Windows (47)
- 64-bit MS Windows (15)
- 32-bit MS Windows (13)
- Project is an Operating System Distribution (4)
- Project is OS Distribution-Specific (2)
- Project is an Operating System Kernel (2)
- Windows (739)
- Mac (679)
- Modern (447)
- BSD (394)
- Android (269)
- Artificial Intelligence
- Electronic Design Automation (EDA)
- Medical Science Apps.
- Human Machine Interfaces
- Information Analysis
- Interface Engine/Protocol Translator
- Earth Sciences
- Molecular Science
- Test and Measurement
- Programming Language: Perl ×
Web based PHP interface to communicate to Maxima computer algebra system in the server. It takes user input, send it to Maxima, and show the output back to website. It could send almost any commands including 'plot2d' and 'plot3d' to plot graphs.6 weekly downloads
unipred is short for Universal Predictor - software that would predict future and possibly past events based on the algorithm used in Bible Code, prediction philosophies used in Tarot cards and latest developments in astrology, quantum physics etc.
Encode Arabic provides tools for encoding and decoding Arabic in Haskell, Python, Perl, or LaTeX. Interprets the ArabTeX notation to generate original orthography or phonetic transcription. Supports Buckwalter and other romanizations. Converts legacy byte encodings into Unicode. http://github.com/otakar-smrz/encode-arabic1 weekly downloads
Anubadok: The Bengali Machine Translator. A machine translation system for English to Bengali.14 weekly downloads
ZORRO is a probabilistic masking program that assigns confidence scores to each column in a multiple seqeunce alignment. These scores can then be used to account for alignment accuracy in phylogenetic inference pipelines.10 weekly downloads
VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.9 weekly downloads
Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.1 weekly downloads
This is an NIDS/HIDS, Network plus Host based Intrusion Detection System. Este é um NIDS / HIDS, Sistema de Detecção de Invasões Baseado em Redes e em Máquinas.
IMP is an automated tool for intron-flanking primer design based off of Expressed Sequence Tags (ESTs). It's intended for use in species with limited to no genomic sequence data available.1 weekly downloads
Provide a set of circuit design wizards to assist in electronic design. The wizards should initially provide a graphical output of the circuit, the values of components and a SPICE netlist for simulation. This project is in the early stages.
The SNP ratio test can assess significance of enrichment of significant associations in genome-wide association studies. Tests can be applied to pathways such as KEGG/GO, or user-defined pathways to test specific hypotheses. See link below for more.2 weekly downloads
The CounterMoon suite describes a collection of tools and ideas created when working on the http://CounterMoon.org project. I've been lucky enough to get help with this project: I want to return the favor as much as possible.
The Multi-purpose Automated Genome Project Investigation Environment (MAGPIE, http://magpie.ucalgary.ca/), is a software package for the automated curation and presentation of DNA and protein sequences. Freely available under terms of Apache license v2.02 weekly downloads
PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging".1 weekly downloads
The Electronic Laboratory Notebook (ELN) - a collaborative, web-based analog of the paper notebook. The ELN can be used to share and record text, images, 3-D molecular structures, live graphs, etc. and can be extended to support additional data types.12 weekly downloads
On December 8, 2009 the UK Met Office released records of worldwide land surface temperature readings. This project analyzes these records and produces output files that can be read by gnuplot and Google Earth to show temperature trends.
This is a utility to convert a set of fasta formatted sequences along with output from ELAND or SOAP (and other next generation sequence alignment in due time) to make them viewable using eagleview.1 weekly downloads
BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.1 weekly downloads
A probabilistic method for enzyme prediction that accounts for the sequence diversity across enzyme families.
FusionMiner is a molecular biology program which accepts genomic alignments in BLAST/BLAT tabular output and attempts to find true fusion transcripts. A single command runs the pipeline and generates results.1 weekly downloads
HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures.2 weekly downloads
Landscape is a distributed graph computing ecosystem, who has the ability to serve up objects in domain graphs in the goals of high availability, reliability and performance.
arb is designed to solve arbitrary partial differential equations on unstructured meshes using an implicit finite volume method. arb's application is in Computational Fluid Dynamics (CFD), Heat and Mass transfer. Download from the project homepage.
A set of command line tools to extract, manipulate, and present multidimensional data. These tools are targeted specifically at summarizing results of simulation experiments.1 weekly downloads