Science & Engineering Software

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Science & Engineering Software

  • Identify and respond to threats before damage is done Icon
    Identify and respond to threats before damage is done Icon

    A SIEM that makes it easy to use logs for security, compliance, and troubleshooting.

    SolarWinds® Log & Event Manager (LEM) delivers comprehensive Security Information and Event Management (SIEM) capabilities in a highly affordable, easy-to-use, and quick-to-deploy virtual appliance. LEM provides the visibility, security, and control that IT professionals need to alert on and respond to security threats, and assist in meeting the regulatory compliance guidelines of HIPAA, PCI DSS, SOX, and more. Try it FREE for 30 days!
  • SolarWinds is #1 in Network Monitoring. Icon
    SolarWinds is #1 in Network Monitoring. Icon

    Reduce network outages and improve performance with advanced network monitoring software

    SolarWinds® Network Performance Monitor (NPM) is the ONLY monitoring solution with NetPath™ for hop-by-hop visibility into your critical paths, on-premises and into the cloud. NPM also features PerfStack™, helping you accelerate identification of root cause by dragging-and-dropping network performance metrics on a common timeline for immediate visual correlation across all of your network data. See why we're the leader. Try it free for 30 days!
  • Linux GPIB Support

    Linux GPIB Driver package (source)

    The Linux GPIB Package is a support package for GPIB (IEEE 488.2) hardware. The package contains a development environment consisting of a GPIB library written in C, kernel driver modules, and bindings for several other languages.

  • NCO netCDF Operators

    Command-line operators for netCDF and HDF files

    The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links.

  • Perl Data Language Icon

    Perl Data Language

    The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.

  • Generic Model Organism Database Project Icon

    Generic Model Organism Database Project

    GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.

  • Grinder Icon

    Grinder

    Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.

  • Discover Server and Application Network Dependencies Icon
    Discover Server and Application Network Dependencies Icon

    Discover and troubleshoot application dependencies to determine if it’s an application or network problem with SolarWinds Server & Application Monitor

    Server and Application Monitor helps you discover application dependencies to help identify relationships between application servers. Drill into those connections to view the associated network performance such as latency and packet loss, and application process resource utilization metrics such as CPU and memory usage. Determine if process utilization or network performance is affecting the application and end-user performance.
  • PRINSEQ Icon

    PRINSEQ

    A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.

    Downloads: 94 This Week Last Update: See Project
  • Gene Ontology

    The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.

  • FreeMED

    GPL-licensed Electronic Medical Record and Practice Management system for medical providers that runs in any web browser in multiple languages. It provides an XML-RPC backend and multiple import and export formats, as well as reporting and other features

  • scalpel

    Genetic variants discovery tool

    Bioinformatics pipeline for discovery of genetic variants from NGS reads.

  • Modular Audio Recognition Framework

    MARF is a general cross-platform framework with a collection of algorithms for audio (voice, speech, and sound) and natural language text analysis and recognition along with sample applications (identification, NLP, etc.) of its use, implemented in Java.

  • Ranked ‘Best App’ Password Manager by Apple and Google Icon
    Ranked ‘Best App’ Password Manager by Apple and Google Icon

    Still writing down passwords? Or rotating between a handful that you can remember? Not safe! Get Dashlane, It’s FREE!

    With all the accounts you have, remembering every single password is impossible. Dashlane protects your passwords and creates an easy, secure way to access all of your accounts on any device you own.
  • Simple Event Correlator

    Simple Event Correlator (SEC) is a lightweight event correlator for network management, log file monitoring, security management, fraud detection, and other tasks which involve event correlation.

  • openEAR

    openEAR is the Munich Open-Source Emotion and Affect Recognition Toolkit developed at the Technische Universität München (TUM). It provides efficient (audio) feature extraction algorithms implemented in C++, classfiers, and pre-trained models on well-known emotion databases. It is now maintained and supported by audEERING. Updates will follow soon.

  • MView

    Extract and reformat a sequence database search or multiple alignment

    NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. Inputs: - Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF. Outputs: - HTML, FASTA, CLUSTAL, MSF, PIR, RDB (tab-separated). Found a bug? Please open an issue on the MView issue tracker at https://github.com/desmid/mview/issues or send an email to biomview@gmail.com.

  • Whole-Genome Shotgun Assembler

    Celera Assembler (CA) is a whole-genome shotgun (WGS) assembler for the reconstruction of genomic DNA sequence from WGS sequencing data.

  • DeconSeq Icon

    DeconSeq

    The DeconSeq tool can be used to automatically detect and efficiently remove sequence contamination from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface. More at http://deconseq.sourceforge.net

  • XASTIR Icon

    XASTIR

    Multiplatform Ham Radio APRS and Mapping Program

    NOTE: Code commits are FROZEN on SourceForge: New code is now at <http://github.com/Xastir/Xastir>. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE.

  • Free DELTA Icon

    Free DELTA

    Software tools for processing taxonomic descriptions in DELTA format

    The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format.

    Downloads: 49 This Week Last Update: See Project
  • HaploPainter

    HaploPainter - a pedigree and haplotypes drawing tool written in Perl/Tk. The software processes pedigree information in standard linkage formats combining haplotype information outputs from Simwalk, Genehunter, Allegro and Merlin.

  • Free tools and cores for FPGAs

    Tools for FPGA development and IP cores. This project provides tools, cores and documentation to develope FPGA applications. The project focuses on VHDL.

  • Octave's neural network package

    A neural network package for Octave! Goal is to be as compatible as possible to the one of MATLAB(TM).

    Downloads: 32 This Week Last Update: See Project
  • metaf2xml Icon

    metaf2xml

    Parse and decode METAR, TAF, SYNOP, BUOY, AMDAR and write data as XML

    metaf2xml can download, parse and decode aviation routine weather reports (METAR, SPECI, SAO), aerodrome forecasts (TAF), synoptic observations (SYNOP), observations from buoys (BUOY) and meteorological reports from aircrafts (AMDAR). Data can also be taken from decoded BUFR messages. The extracted data can be written as XML or passed to a user-defined function (all done in Perl). It also provides XSLT style sheets to convert the XML to plain language (text, HTML), or XML with different schemas. A web-based (CGI) user interface can be used to download and display up-to-date weather data from NOAA, Ogimet, and other sources.

    Downloads: 11 This Week Last Update: See Project
  • MicroGP Icon

    MicroGP

    A multi-purpose extensible self-adaptive evolutionary algorithm

    MicroGP (uGP) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm.

  • BreakDancer

    BreakDancer-0.0.1 is a Perl package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads.

  • GGNFS suite

    GGNFS is an open source implementation of General Number Field Sieve algorithm for factoring integers.

  • MaxBin

    An automatic tool for binning metagenomics sequences

    MaxBin is a software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users could understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequencing reads. For users' convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. The most current version is 2.2.4. MaxBin was published on Microbiome journal (2:26)! Please cite the Microbiome paper if you use MaxBin in your work. More information can be found at the official MaxBin website: http://downloads.jbei.org/data/MaxBin.html to

    Downloads: 28 This Week Last Update: See Project

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