Science & Engineering Software

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Science & Engineering Software

  • Microsoft Office 365 monitoring simplified Microsoft Office 365 monitoring simplified Icon
    Microsoft Office 365 monitoring simplified Icon

    Monitor your Office 365® (O365) Exchange™ mailboxes and system applications with the SolarWinds® Server & Application Monitor unified platform.

    SolarWinds Server & Application Monitor allows you to monitor your hybrid IT applications and systems. Monitor Microsoft® Office 365 Exchange side by side on your on-premises Exchange server and other applications. Check, track, and report on O365 user/shared mailbox growth, users over quota, archived mailboxes, inactive mailboxes, mobile device, mailbox groups, and more. You can also monitor Microsoft portal access to help ensure you’re meeting your SLAs.
  • The Sight of Sound The Sight of Sound Icon
    The Sight of Sound Icon

    ­ Improve VoIP Visibility from SIP to RTP

    Cloudbased voice solutions are common in enterprise networks and frustrating for operations teams to manage. Simplify VoIP monitoring by having a proactive analysis of on-prem, hybrid and UCaaS voice services. Try the ThousandEyes VoIP monitoring solution today, free.
  • CCA-fMRI

    CCA-fMRI is a SPM-toolbox (http://www.fil.ion.ucl.ac.uk/spm/) for detecting brain activity pattern using functional magnetic resonance imaging (fMRI) in combination with canonical correlation analysis.

    Downloads: 1 This Week Last Update: See Project
  • CorThiZon Icon

    CorThiZon

    Cortical Thickness of brain by Zones

    CorThiZon is a Matlab toolbox. MRI 3D T1 images are treated to estimate cortical thickness by zones in native and normalized space. It uses a Laplace-based technique following brain segmentation. Results can be easily reported in Excel files for further statistical analysis. If you use this toolbox, please reference: ‘Early diagnostic of Alzheimer’s disease using cortical thickness: impact of cognitive reserve', Querbes O, Aubry F, Pariente J, Lotterie JA, Démonet JF, Duret V, Puel M, Berry I, Fort JC, Celsis P, Alzheimer’s Disease Neuroimaging Initiative, Brain, 2009 Aug, 132(Pt 8):2036-47 A footnote giving the link to: http://sourceforge.net/projects/corthizon/ will be appreciated.

    Downloads: 1 This Week Last Update: See Project
  • Density-ratio based clustering Icon

    Density-ratio based clustering

    Discovering clusters with varying densities

    This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying densities that would otherwise impossible had the same algorithm been applied to the unscaled dataset. Reference: Zhu, Y., Ting, K. M., & Carman, M. J. (2016). Density-ratio based clustering for discovering clusters with varying densities. Pattern Recognition. http://www.sciencedirect.com/science/article/pii/S0031320316301571

    Downloads: 1 This Week Last Update: See Project
  • GFtbox Icon

    GFtbox

    GFtbox is a Matlab package for simulating biological growth of leaves, petals, and similar organs.

    Downloads: 1 This Week Last Update: See Project
  • GUItars

    GUItars is designed for the analysis of high throughput RNAi data.

    Please refer to the original article published in PLOS ONE at http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0049386. GUItars's user-friendly graphical interface enables rapid analysis of RNAi and small molecule screens. GUItars uses SSMD for hit selection, which is preferred for its ability to diminish sample size effects and the false hit rate, making it superior to other widely used HTS analysis methods. The program can handle the analysis for screens without replicates as well as with replicates. For comparison purposes, non-SSMD-based methods such as percent activity, z-score, and t-test are also provided as scoring options. Version 2.1 released: several bugs fixed. Version 3.0 released for Windows and Mac: experiment-wise analysis option, map to all samples option (no hit cut-off needed), percent activity for replicates option and .ai output format are added

    Downloads: 1 This Week Last Update: See Project
  • HM integration for vessel segmentation Icon

    HM integration for vessel segmentation

    Human Machine integration for vessel segmentation has as main objective finding precise methods for the segmentation of blood vessels in retinal images, with the main goal of improving screening and diagnosis procedures.

    Downloads: 1 This Week Last Update: See Project
  • JLAB

    Matlab freeware for data analysis, by J. M. Lilly

    Downloads: 1 This Week Last Update: See Project
  • LibppGam

    pp->gamma cross sections parametrization

    This library contains the parametrization of pp->gamma cross section functions based on Phys.Rev. D90 (2014) 12, 123014 (astro-ph/1406.7369) work. The functions are written in Python, Fortran and Matlab. Please, if you use this library DO NOT reference to this webpage, instead reference to Phys.Rev. D90 (2014) 12, 123014 (astro-ph/1406.7369), "Parametrization of gamma-ray production cross-sections for pp interactions in a broad proton energy range from the kinematic threshold to PeV energies" by Ervin Kafexhiu, Felix Aharonian, Andrew M. Taylor, Gabriela S. Vila

    Downloads: 1 This Week Last Update: See Project
  • M.Tracing Icon

    M.Tracing

    Optical ray tracing library based on MATLAB environment Now working on the simple raytracing simulation. Documents are not ready yet. NEW UPDATE : ray generation function, other bug fix and multiple ray treatment

    Downloads: 1 This Week Last Update: See Project
  • MORPHE Icon

    MORPHE

    MORphological PHenotype Extraction

    MORphological PHenotype Extraction (MORPHE) is a suite of automated image processing, visualization, and classification algorithms to facilitate the analysis of heritable and clonal red-to-green transitions that occurred during the growth of a colony.

    Downloads: 1 This Week Last Update: See Project
  • NaRIBaS Icon

    NaRIBaS

    Unix-based preparation and analysis toolbox for molecular simulations

    Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting framework rather than a black-box software. Task specific input and preparation or analysis function, are easy expandable to meet the scientific characteristic of constant changing properties. Concepts for efficiently storing and analysing large files in conjunction with graphical visualization and numerical data processing are presented in a Manual. A documented script collection that allows reproducing all simulations and analysis results presented in the Doctoral thesis of the author.

    Downloads: 1 This Week Last Update: See Project
  • Open Source Image Velocimetry

    A suite of programs for performing particle image velocimetry, a common technique in the field of fluid mechanics. The suite includes programs to perform cross-correlation, synthetic image generation, as well as graphical visualization.

    Downloads: 1 This Week Last Update: See Project
  • OpenDAFF Icon

    OpenDAFF

    Directional Audio File Format

    OpenDAFF is a free, open-source software package for directional audio data - like the directivity of microphones, speakers, as well as head-related transfer functions (HRTFs)

    Downloads: 1 This Week Last Update: See Project
  • OpenFLUX2

    OpenFlux2 is an extended version of OpenFLUX (https://sourceforge.net/projects/openflux/) - the modern MATLAB-based modelling software for 13C flux analysis (MFA). The following features were implemented in OpenFLUX2, which were not present in original software: integrated support for calculation and analysis of parallel labeling experiments (PLE), extended statistical analysis of parameter estimation results, calculation of fluxes and measurements correlation, structural identifiability analysis and elements of experimental design.

    Downloads: 1 This Week Last Update: See Project
  • PAMELA Schrodinger-Poisson Code

    self-consistent schrodinger-poisson code for core-shell nanowires

    PAMELA (Pseudospectral Analysis Method with Exchange & Local Approximations) is a self-contained suite of MATLAB codes that can calculate electronic energies, densities, wavefunctions, and band-bending diagrams within a self-consistent Schrödinger-Poisson formalism.

    Downloads: 1 This Week Last Update: See Project
  • PrivLocal/PrivGene Icon

    PrivLocal/PrivGene

    Differentially Private Model Fitting Using Genetic Algorithms

    Downloads: 1 This Week Last Update: See Project
  • QUDeX-MS

    Hydrogen/deuterium exchange estimation for isotopic fine structure MS

    Hydrogen-deuterium exchange coupled to mass spectrometry permits analysis of structural dynamics, stability, and molecular interactions of proteins. Resolving isotopic fine structure during mass spectrometry has been recently demonstrated to allow direct detection and quantification of deuterium incorporation distinct from peaks corresponding to non-deuterium incorporated natural abundance heavy isotopomers. Here, we present a graphical tool that allows for a rapid and automated estimation of deuterium incorporation from a spectrum with isotopic fine structure resolved. Given a peptide sequence or elemental formula, the distribution of deuterium-associated mass-to-charge ratios is calculated based on a particular charge state corresponding to the molecular species resolved in an input mass spectrum. Peaks in the input mass spectrum fitting within bins corresponding to these values are used to determine the distribution of deuterium incorporated.

    Downloads: 1 This Week Last Update: See Project
  • Randomized Algorithms Control Toolbox

    Randomized Algorithms Control Toolbox is a Matlab toolbox, provides analysis and synthesis methods for control problems with uncertainties.

    Downloads: 1 This Week Last Update: See Project
  • SILA Icon

    SILA

    Automated bacterial and archaeal genome annotation system

    SILA is a system for automated annotation of bacterial and archaeal genomes. It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801

    Downloads: 1 This Week Last Update: See Project
  • SPKtool

    SPKtool is a toolbox developed on MATLAB which enables a user to perform spike (action potential of neurons) detection, spike sorting (manually or automatically) and spike train analysis.

    Downloads: 1 This Week Last Update: See Project
  • SaliencyToolbox

    A collection of Matlab functions and scripts for computing the saliency map for an image, for determining the extent of a proto-object, and for serially scanning the image with the focus of attention.

    Downloads: 1 This Week Last Update: See Project
  • SpiNet

    SpiNet is a neural simulation tool for large spiking networks with highly heterogeneous synapses. Neurons are modelled as I&F units with dual exponential synaptic conductances. Complex network models can be easily built using the included tool NetBuilder

    Downloads: 1 This Week Last Update: See Project
  • SysGenSIM Icon

    SysGenSIM

    SysGenSIM is a bioinformatics toolbox to create artificial gene expression datasets by simulating Systems Genetics experiments.

    Downloads: 1 This Week Last Update: See Project
  • TrackArt

    GUI for diffusion simulation and SMT data analysis

    TrackArt is a simple MATLAB GUI for single particle tracking data analysis and simulation.

    Downloads: 1 This Week Last Update: See Project
  • UW Overlay Utilities

    MATLAB tools to create overlay images from NIfTI or ANALYZE files (neuroimaging format) and convert them to DICOM for use in the clinical environment. Allows radiologists and neurosurgeons easy access to fMRI data. http://paradime.net/research/

    Downloads: 1 This Week Last Update: See Project

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