TFEL/MFront introduces DSLs based on C++ to handle material knowledge
The TFEL library is a collaborative effort of the French Atomic Commission and Électricité de France. TFEL mostly includes the MFront code generator. MFront is based on C++ and provides several domain specific languages which were designed to simplify the implementations of new material properties, mechanical behaviours and simple material models. A particular focus was made on mechanical behaviours which are by essence more complex and may have significant impact on the numerical performances of mechanical simulations. Various performance benchmarks show that the code generated using MFront is in most cases on par or better than other implementations, generally written in Fortran. For mechanical behaviours, MFront introduces interfaces for various finite element or FTT solvers (Cast3M, Code-Aster, ZeBuLoN, Abaqus, Europlexus, AMITEX_FFT, etc..). The authors hope that it will prove usefull for researchers and engineers, in particular in the field of solid mechanics.
3-D diffusion solver for biological problems
BioFVM is an open source diffusive transport solver for biological problems. It can solve for the diffusion of tens or hundreds of substrates on large 3-D domains. For simplicity, the code has minimal external dependencies. BioFVM was first published in: A. Ghaffarizadeh, S.H. Friedman, and P. Macklin. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations. Bioinformatics 32(8): 1156-8, 2016. DOI: 10.1093/bioinformatics/btv730 method paper: http://dx.doi.org/10.1093/bioinformatics/btv730
MACE is a Mathematical program for Algorithms, Calculations, Equations
MACE is a Mathematical program for Algorithms, Calculations and Equations. It is designed to be as easy to run as a hand-held calculator. The goal is a neat tool covering all fields of mathematics at advanced highschool and university level. MACE has 160 logical operations, statistical distributions and functions in the fields Analysis, Arithmetic, Complex Functions, Linear Algebra, Differential Calculus and Statistics. With this release 10 new functions from the field Differential Calculus come including Curve Sketching numerical integrals, diffferentials, tangents. MACE provides a dialog, which supports you to insert functions intuitively. Moreover Mace has a comprehensive help menu to support the user. MACE has also its own skripting language for the advanced user. MACE can calculate with complex numbers and integral residue classes.
MDSTk is a collection of 2D/3D image processing tools aimed at medical images. It contains routines for volume data processing (3D filtering, segmentation, etc.) as well as fast low-level vector graphics library for surface and tetrahedral meshing. MDSTk has been forked by 3Dim Laboratory s.r.o. to provide better support and further push its development forward. Please check VPL (Voxel Processing Library) project available on Bitbucket (https://bitbucket.org/3dimlab/vpl).
PCP (Pattern Classification Program) is an open-source machine learning program for supervised classification of patterns. PCP is a binary executable running on Linux and Windows (under Cygwin environment).
Open source observatory control software
RTS2 is project to create an open source environment for control of a fully autonomous observatory. It is running about dozen fully autonomous observatories. Its modular design allow easily addition of new devices (to already huge supported HW list).
Probabilistic Risk Assessment Tool
SCRAM is a free and open source probabilistic risk analysis tool. The tool is under development to include fault tree, event tree, common cause, and other standard analyses.
PileWorks provides the organizational structure for coordinating several different projects which approach some aspect of Pile Technology. PileWorks defines a set of interfaces and implements some basic infrastructure for Pile engines and agents.
Scanning Probe Microscopy Controller and Data Visualization Software
GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM simulation support via math-plugin. Based on several hardware options it supports a commercially available DSP hardware and provided also Open Source Code for all the low level signal processing tasks and instrument controls in a most flexible and adaptable manner. All latest software is available via CVS only or Live Demo/Install CD: http://www.ventiotec.de/linux/GXSM-Linux.iso
PEP is a modelling and verification framework for parallel systems, providing a large number of different modelling languages and verification techniques (e.g. SDL, Petri nets and model checking)
High-realistic war similator tuned for WWII epoch and around. Over 12000 historical weapons, full world gridded geodata, including climate and population
Conefor Sensinode quantifies the importance of habitat areas for the maintenance or improvement of landscape connectivity. It is conceived as a tool for decision-making support in landscape planning and conservation. Further details: www.conefor.org
FlexCRFs: A Flexible Conditional Random Fields Toolkit for Labeling and Segmenting Sequence Data (this includes a parallel implementation of CRFs called PCRFs to support training CRF models on massively parallel computer systems).
QPlot - 2d plotting tool based on Qwt
QPlot - 2d plotting tool based on Qwt project (http://qwt.sf.net). QPlot reads mission INI-files and draw 2-d graphics. Data may read from binary and text files both. Plot area may have 2-4 axis. QPlot may used as Gnuplot alternative. QPlot may used to descovery Qwt as example programm.
The world's most advanced CNL reasoner
Despite centuries of exhaustive research, the theory of evolution still hasn't provided a satisfying explanation for the origin of intelligence and language. According to the biblical world view, God has created laws of nature. Being based on the Laws of Intelligence embedded in Grammar, only Thinknowlogy implements the natural meaning (intelligent function) of words like definite article “the”, conjunction “or”, possessive verb “has/have” and past tense verbs “was/were” and “had”. It is demonstrated by: • Programming in natural language; • Reasoning in natural language: - drawing conclusions (more advanced than scientific solutions), - making assumptions (with self-adjusting level of uncertainty), - asking questions (about gaps in the knowledge), - detecting conflicts and some cases of semantic ambiguity, - displaying of justification reports for the self-generated knowledge; • Multilingualism, proving: Languages have one common origin.
Turing and Post Machines' C++ Simulators
The C++-programs simulate : Nondeterministic/Deterministic Multitape Turing & Post Machines, Universal Turing Machine, Turing Machine with faults, failures and recovery.
kradview is a viewer of images obtained for some different sources: X-ray, NMR and all DICOM-compatible imaging devices. Its aim is to be a complete platform for medical imaging and image processing.
2D Finite Element Analysis for Acoustics
Wavefront is a programme for simulating 2D acoustic systems, with a particular emphasis on determining wavefront shapes at the mouths of horns. It accepts CAD drawings in DXF format and produces animated displays of wave propagation as well as exporting various data as text files. It is GPL software and runns on Linux and Windows.
CDNsim is a GNU/LINUX simulation tool for CDNs, written in C++ (core) and python (GUI wizard). It models: redirection policies, cache policies, TCP/IP, batch simulations, statistics extraction and more. CDNsim is uses the OMNet++ library
Preparation of GPS routes and analysis of GPS logs in the context of outdoor sports (biking, skiing, trecking, gliding, geocaching, mountaineering). Our hope is to have a multi platform, multi GPS file and map format software.
A Platform for Multiscale Analysis
This project is mainly focused on development of a platform suitable for multiscale analysis of solids. The initial development is aimed at coupling finite elements with atomistic models and the Arlequin method. The features are: Fully extensible, object oriented Fortran 2003 compliant Many features of the Fortran 2003 standard such as derived data types, type extension, abstract data types, generic procedures, type bound procedures are used to make a flexible and doable code. MPI parallel molecular dynamics with 3 potentials (LJ, EAM, MEAM ). This is based on WARP which is an old version of LAMMPS. To easily understand and work with molecular dynamics/mechanics with effective potentials Interface to several linear equation solvers (MKL, MUMPS, PSBLAS, SPARSKIT) An F03 interface for LAMMPS (C++ version). This is coupled to ABAQUS too. All the LAMMPS object are accessible through the F2003 interface and this is used to concurrently couple LAMMPS
Simple But Powerful VIM Based Build Environment With Flex & Bison
The project's main purpose is to combine the existing open source tools into a powerful development environment. This is not just a Visual Studio like development environment, but also a Notepad upgrade, which can also be used to perform common tasks in daily use.
M6811 Code-Seeking Disassembler
The M6811 Code-Seeking Disassembler is a command-line tool that lets you enter known starting vectors for a given code image for the 6811 micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its companion Fuzzy Function Analyzer uses DNA Sequence Alignment Algorithms to locate similar code in multiple binaries, facilitating reverse-engineering. Originally written to analyze code from GM automotive engine controllers, but is useful anywhere a 6811 micro is being used. Version 1.0 was written in Borland Pascal in April 1996, and updated to v1.2 in June 1999. It was later rewritten to C++ in July 1999 through Jan 2000. While it's been freely available since its creation, it's being released here as an open-source project so the world can better use it as it sees fit. Version 2.0 is completely reworked in 2014 to compile and run with GCC and STL to make it fully portable and accessible to all computer platforms.
The sigrok project aims at creating a portable, cross-platform, Free/Libre/Open-Source signal analysis software suite that supports various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, anemometers, light meters, dataloggers, function generators, power supplies, GPIB interfaces, and more.
ERNE - Extended Randomized Numerical alignEr
We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners),