Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
IRAMUTEQ : Interface de R pour les Analyses Multidimensionnelles de Textes et de Questionnaires. Logiciel de traitement de données pour des corpus texte ou de type individus/caractères. Permet notamment de réaliser des analyses de type "ALCESTE"
OTB is an open-source C++ library for remote sensing images processing
The Orfeo Toolbox is a C++ library for high resolution remote sensing image processing. It is developped by CNES in the frame of the ORFEO program. More information is available at www.orfeo-toolbox.org It is based on the medical image processing library ITK and offers particular functionalities for remote sensing image processing in general and for high spatial resolution images in particular. Targeted algorithms for high resolution optical images (SPOT, Quickbird, Worldview, Landsat, Ikonos), hyperspectral sensors (Hyperion) or SAR (TerraSarX, ERS, Palsar) are available. Orfeo ToolBox has three main access depending on the category of user: write processing chains in C++ using existing filters or creating new ones, use the OTB applications, which is a plugin-based framework allowing to extend high-level processing chains from various environment ( command-line, QT, QGis, Python....) or use Monteverdi, a software for everyday life image manipulation and analysis.
FORTRAN Unit Test Framework FRUIT - TDD in FORTRAN
FORTRAN Unit Test Framework, written in FORTRAN 95. So that all FORTRAN features can be tested. FRUIT has assertion, fixture, setup, teardown, report, spec, driver generation. Rake used as build tool. Tutorials at http://fortranxunit.wiki.sourceforge.net The core testing part is in FORTRAN, this part can be used independent of the Ruby codes. The Ruby code is to make fixtures and reports easier. Rake is to build the project elegantly. This project also demonstrate a new way to build mixed language code in an alternative way than Make. Most of the FORTRAN are important in nature, used in nuclear and aerospace codes, etc, and maintained and written actively. Please help to bring TDD practices to the FORTRAN community. The change could be very hard, personally, I quit, since I could not make the change. I hope your organization will be successful. Enjoy a cup of fruit while maintaining FORTRAN ! Andrew Hang Chen and other maintainers who feel importance of TDD in cr
Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
Flesh is a Java application designed to analyze a document (plain text, rich text, Word documents, and PDFs) and display the difficulty associated with comprehending using the Flesch-Kincaid Grade Level and the Flesch Reading Ease Score.
An aquarium management software with a Simulation Model System
SME LibreAquarium is an Aquarium management system with a Simulation Model Engine (SME) that makes a prediction of the possible measurement values for the different pollutants that affect to these aquatics systems (NO3,PO4, Fe). The simulator consults the recorded analysis to calculate a prediction of the NO3, PO4, Fe, that the these aquatic system produce. It also uses a central (fish, plant and invertebrates) database to check if the actual parameters are Ok, depending on the species that live in the Aquarium. With all the records, the Simulation Model predicts the algae risk too (low,medium,high) and the algae type(green,cyanotic.) using the Redfield coefficient. Appart from that, the program tries to bring another modest contribution to Open Source Software and the World of Aquariums. SME LibreAquarium helps to daily maintenace of the aquarium with habitants control(fishes,plants, invertebrates), expenses, statistics, alarms, etc.
Downline Organizer is a online tool for Compensation Plan Analysis
Powered by http://www.softwaresuite.de Downline Organizer HD 4.0 Webtool for Compensation Plan Analysis and free MLM Software Software: Browserware, Browserapp Requirements: Adobe Flash Player, Adobe Shockwave Plugin Easy to use, just downloading the file and open it in any web browser with flashplugin. Downline Organizer HD is designed specifically for people from the area of network marketing, affiliate marketing and multilevel marketing. It is used to optimize the downline, with the help of a dynamic downline generator and interactive statistics. Downline Organizer HD are usefull for presentations or to analyzing compensation plans for all kind of multilevel marketing business. For example: You can compare the multi-level marketing company with each other and determine when the break-even point was reached. Save your data localy for unlimited compensation plans in one tool. Thanks for sharing and rate!
VIKAMINE is a flexible environment for visual analytics, data mining and business intelligence - implemented in pure Java. It features several powerful visualization and mining methods, and can utilize background knowledge.
This is a Python-based efficient implementation of several semantic similarity measures. The target is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology (GO).
Compares text files and shows correlation between lines.
EDAS2 is a web-based environmental quality data management and decision support framework
IMPORTANT: Legacy Code. New code is hosted in Github https://github.com/esa/pagmo
Accurately predicts disease association of single nucleotide mutations
GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are associated with disease. A host of annotations are provided: orthologous and paralogous multiple sequence alignments, UCSC annotations, reports detailing conservation of a nsSNP in alignments, and links to external nsSNP and gene information such as relevant publications. GESPA is connected to a constantly updating SQL server allowing for fast data retrieval. NOTE: REQUIRES Java 1.7.0+. Port 1433 cannot be blocked by firewall, network, or antivirus program. Please cite: http://tinyurl.com/oj7p84a
GoFigure2 is an open-source, cross-platform application for visualizing, processing and analyzing of multidimensional microscopy data. Users can visualize, segment and track cells through time, detect cell-division and ultimately generate lineages.
Now part of Apache's Mahout machine learning project at http://mahout.apache.org/-- please see there for latest info and code and releases and support!
A platform for setting up autonomic services in a distributed environment. Provides service discovery, service provisioning / usage, autonomic adaptation to the context, mobility, support for supervision and service aggregation, and more.
Adhoc Data Exploration - Live & Easy
Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations, charts, analysis tools,... Connectors (e.g. JDBC, SAP ABAP, OData) can be used to pre-analyse the data and extract it without saving the data as text files. A plugin concept for enhancements are available. Enjoy! Its free for commercial use too. Adele runs without installation from USB stick for Windows, Linux and MacOSX. Last added changes: - data science tools (V1, IQR) - export to remote and desktop databases (mysql,sqlite, ms access) - internet features for emails and domains
BabyTALK is to add another brick in the wall of natural languages learning. The baby needs to structure a corpus of texts when his tutor points and talks about a particular part of the corpus. The baby is also to describe any selected part of the corpus.
A simple script to download all versions (or only the specified) of BOINC to the current directory.
PROJECT IS BEING DEVELOPED UNDER A DIFFERENT NAME: Please visit http://sourceforge.net/projects/modelbuilder/ Datamodeler gives scientists and engineers the possiblity to find any multivariate model for any dataset, how complex or large both may be.
Automatically donate to charity for free, track your charity clicks, and monitor your carbon footprint.
EFIgy is a viewer for EFI (electronic fuel injection) log files. It uses plugins to extend its functionality. Current plugins are mostly for the Holley Commander 950.
A markup language designed to capture science data and its context
The Experiment Markup Language (ExptML) is a markup language, in XML, designed to store all the data and metadata (context) from all parts of the scientific process. The format has a central schema that is used by a schema set that defines 26 different datatypes that are the building blocks of what scientists do when they do experiments in a laboratory.
FastGEO is a computational geometry library written in the object pascal language.