AMOS is a collection of tools for genome assembly
AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.
The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.
The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.
Webtunnel is an HTTP tunnel with some unique features: it runs in the context of a web server; it uses simple requests/responses for proxy traversal; and it is multi-threaded to allow many parallel connections to many destinations simultaneously.
** Deprecated ** Important! All of the software on this web site has been deprecated, and has not been maintained since 2014. All of this software is now being maintained on Github - and can be obtained from https://github.com/jpaulm . Changes and enhancements are still ongoing, and while older software should still work, newer features described in the literature will not be available in SourceForge. The old license was the Artistic license - the software is now in process of being converted to LGPL. This will gradually take place (on Github) over the next few months (in 2016). JavaFBP is now also on Maven.
A web-based software package for comparative genomics
Sybil is a web-based software package for comparative genomics
Association de l'asie pacifique et de l'asie mineur : Mention projet \apac (SF.NET) Chancellerie fédérale Palais fédéral ouest 3003 Berne
This project provides a framework for the research and development of software tools for the analysis of highway capacity (asphalt and concrete, not electronic!) Our first focus will be on perl module implementations of the procedures in the Highway Capa
The Introspector enables the programming tools that deal with source code such as the compiler to communicate in a standard and neutral manner reducing the accidental cost of programming. http://github.com/h4ck3rm1k3/
SENECA is a program package for Computer Assisted Structure Elucidation (CASE) of organic molecules. While it currently uses mainly 1D and 2D NMR spectroscopy for the CASE process it is open to all types of spectroscopic data.
Voltage Drop Calculator for EE, supports multiple segments, 1 and 3 phase.
iROS is a meta-operating system for technology-rich "interactive rooms". The core components (Event Heap, DataHeap, iCrafter) provide communication, data storage, and service management for an iRoom.
Bobware tool suite is a set of small EDA tools which are useful in the design of integrated circuits. The suite contains a perl/tk script for region planning large ASICs (application specific integrated circuits.)
EVidenceModeler (aka EVM) combines ab initio gene predictions and spliced protein and transcript alignments into weighted consensus gene structure predictions.
A small but extensible Java based "embedded lisp"- derives from the 1960 Mc Carthy Lisp a new consequently functional, dynamically scoped dialect enriched by modern features (pattern matching, parallel processing, implicit lex. closures etc).
Personal supercomputer on a disk! The Science by FlashMob project creates specialized live booting CDs that create a single user supercomputer from a set of handy laptop or desktop machines. Suitable for MPI, CHARM++, and pyMPI parallel programs.
SyntenyMiner provides a user interface to navigate matches between multiple genome sequences.
TransposonPSI is an analysis tool to identify protein or nucleic acid sequence homology to proteins encoded by diverse families of transposable elements.
4th Axis Repeater for CNC machining. Repeats a snippet of G-code around the A-axis by user defined intervals. Saves a lot of time for repetitive code situations.
This project is result of a challenge "creating a fractals generator by using only C++ and Qt", AiFractals is based on Qt Script and you can enjoy by generating your custom fractals =) by your own algorithms (Qt Script)
Albion is a digital document archive presentation package. Features include a searchable database, an integrated spell checker, and automatic thumbnail generation. As native Perl as possible, the database/photos/search-function can be delivered on CD!
A Perl module that provides methods for retrieving each and every field from a standard SwissProt file.
The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects in OBO, OWL, and other commonly used ontology representation
Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.
A collection of Perl modules and programs for bioinformatics. Design intention is to make most common, straight-forward tasks in computational biology as simple, and portable, as possible.