Bio-Informatics Software

OS OS

  • More...
    • More...

Category Category

    • More...

License License

    • More...

Translations Translations

  • More...

Programming Language Programming Language

  • More...

Status Status

  • More...

Audience Audience

    • More...

User Interface User Interface

    • More...
  • More...

Database Environment Database Environment

Freshness Freshness

Bio-Informatics Software

  • Get the most out of your virtual environment. Get the most out of your virtual environment. Icon
    Get the most out of your virtual environment. Icon

    Monitor VMware® vSphere® and Microsoft® Hyper-V® environments from one screen. Rule your VM environment with SolarWinds® Virtualization Manager.

    SolarWinds Virtualization Manager (VMAN) provides VMware vSphere and Microsoft Hyper-V performance monitoring in a single pane of glass. Use built-in management actions to instantly remediate virtualization issues. VMAN also features PerStack ™, helping you accelerate identification of root cause by dragging-and-dropping VM performance metrics on a common timeline for immediate visual correlation across all your VM data. Try it free for 30 days!
  • H-mito

    H-mito is a mitochondrial DNA haplogroup prediction tool based on the phylogenetic tree http://www.phylotree.org/. Ancillary scripts: mitoP.py to extract mutation lists and clustal-2-fasta.zip to join, align through clustalw and convert data.

    Downloads: 0 This Week Last Update: See Project
  • HitsRanking

    Integration of results from multiple homology searches

    Downloads: 0 This Week Last Update: See Project
  • Hungarian Pediatric Cancer Registry

    The Hungarian Pediatric Cancer Registry contains data about leukemia and solid tumor patients younger than 18 year-old from 1970 and 1975, respectively. This project makes the stucture of the database (excluding patient data) and scripts helping to mainta

    Downloads: 0 This Week Last Update: See Project
  • ILNumerics.Net Icon

    ILNumerics.Net

    math lib for .NET. n-dim arrays, complex numbers, linear algebra, FFT, sorting, cells- and logical arrays as well as 3D plotting classes help developing algorithms on every platform supporting .NET. Sources from SVN, binaries: http://ilnumerics.net

    Downloads: 0 This Week Last Update: See Project
  • IMPACT

    IMPACT is an integrated multi-read peak calling tool for ChIP-Seq data. IMPACT utilizes multi-reads in calling peaks and provides users with high-confidence peaks. In addition, IMPACT provides a completely integrated pipeline which produces downstream analysis results such as motif discovery and peak-to-gene annotation.

    Downloads: 0 This Week Last Update: See Project
  • Ida

    Ida is a data analysis application framework that features user interface integration, database support, and bridges to popular statistical analysis packages. Application development is currently focused on the bio-informatic analysis of microarrays.

    Downloads: 0 This Week Last Update: See Project
  • Insilicos Cloud Army

    Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.

  • Java rapid genetic programming

    jrgp is a strong-typed Genetic Programming system, which features a graphical interface (gool) to setup and run GP-problems and a tool (fs-d) that greatly simplifies the definition of a GP-problem.

    Downloads: 0 This Week Last Update: See Project
  • Jylab

    Jylab is a java library for plotting graphs in Jython, using Matlab-like syntax. It is a wrapper for JFreeChart, and is similar to matplotlib for Python.

    Downloads: 0 This Week Last Update: See Project
  • KAPPA

    KAPPA (Key Aminoacid Pattern-based Protein Analyzer) is a sequence search program dedicated to the discovery and clustering of proteins defined by a key aminoacid pattern.

    Downloads: 0 This Week Last Update: See Project
  • LGTmate Icon

    LGTmate

    Lateral Gene Transfer utility

    LGTmate is a simple and powerful bioinformatic software tool to identify lateral gene transfer events and contaminants in Eukaryotic proteomes. It is available as a GUI or command-line application, with no dependencies and no installation required.

    Downloads: 0 This Week Last Update: See Project
  • LIMPort Sys

    LIMPortSys is a python cgi project providing web-based laboratory notes collecting, searching and analysis services. Based on a flexible template and XML as record format, this project could be considered as a way to integrate lab information.

    Downloads: 0 This Week Last Update: See Project
  • Laboratory for Genome Bioinformatics

    Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.

    Downloads: 0 This Week Last Update: See Project
  • Libraries for electrophysiological data

    This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data

    Downloads: 0 This Week Last Update: See Project
  • Linked Metabolites

    A GUI-based search tool that allows the exploration of the relationships between Metabolites.

    Downloads: 0 This Week Last Update: See Project
  • MAXIMUS

    MAXIMUS is a genome assembly pipeline which takes the best out of multiple reference assemblies and de novo assembly. The benefits of this approach include better assembled repetitive regions, less gaps and higher accuracy for the resultant assembly.

    Downloads: 0 This Week Last Update: See Project
  • MIVF

    MIVF - Medical Imaging and Visualization Factory, is a framework for medical applications. It supplies a platform, in which image processing and 3D visualization algorithms can be employed as reusable components (functional modules or plugins).

    Downloads: 0 This Week Last Update: See Project
  • Magic Garden

    Artificial plants laboratory.

    Downloads: 0 This Week Last Update: See Project
  • MaryGold

    Variation analysis of metagenomic samples

    The package enables detection of sequence variation between metagenomic samples.

    Downloads: 0 This Week Last Update: See Project
  • Maximum Common Genome Alignment (MCGA) Icon

    Maximum Common Genome Alignment (MCGA)

    Pipeline for creating core genome alignments for phylogenetic analysis

    Maximum Common Genome Alignment (MCGA) Tool MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees.

    Downloads: 0 This Week Last Update: See Project
  • McGill Vision Research Eye Tracker

    Open Source Eye Tracking Solution

    McGill Vision Research Eye Tracker is a complete solution to track oculomotor movements. We provide a list of equipment, we provide all the required software. We guide the user through the installation process until ready to track.

    Downloads: 0 This Week Last Update: See Project
  • MedClus

    Clustering tool for publications from the MEDLINE database

    Downloads: 0 This Week Last Update: See Project
  • MetabolODE

    MetabolODE derives, solves, and optimizes a set of differential equations describing the metabolic flux through any biochemical pathway.

    Downloads: 0 This Week Last Update: See Project
  • Microarray assosiated motif analyzer

    Cis-element prediction tool from microarray data

    We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this method. After optimization, MAMA accurately simulated more than 87% of gene expression. See Kakei Y, Ogo Y, Itai RN, et al. (2013) Development of a novel prediction method of cis-elements to hypothesize collaborative functions of cis-element pairs in iron-deficient. Rice 6(1): 22.

    Downloads: 0 This Week Last Update: See Project
  • MicrobeGPS Icon

    MicrobeGPS

    The Explorative Taxonomic Profiling Tool for Metagenomic Data

    MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily.

    Downloads: 0 This Week Last Update: See Project

Get latest updates about Open Source Projects, Conferences and News.

No, Thank you