Results for: library

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132 programs for "library"

  • Develop killer analytical applications Develop killer analytical applications Icon
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    Discover and troubleshoot application dependencies to determine if it’s an application or network problem with SolarWinds Server & Application Monitor

    Server & Application Monitor helps you discover application dependencies to help identify relationships between application servers. Drill into those connections to view the associated network performance such as latency and packet loss, and application process resource utilization metrics such as CPU and memory usage. Determine if process utilization or network performance is affecting the application and end-user performance.
  • Hyperballs Icon

    Hyperballs

    We present an improved ball and stick representation called HyperBalls. This type of depiction is particularly useful to represent dynamic phenomena, such as the evolution of non covalent bonds and takes advantage of GPU capabilities. HyperBalls are now fully integrated into the UnityMol software and are actively developed in that context. You will find the most up-to-date versions of the shaders in the http://unitymol.sourceforge.net project.

    Downloads: 1 This Week Last Update: See Project
  • CAAS - Custom Array Analysis Software

    This set of C++ classes allows the user to load data from custom Affymetrix microarrays. This is a good platform for new method development and it contains several common normalization algorithms.

    Downloads: 0 This Week Last Update: See Project
  • libsmm

    Libsmm is a framework for performing inference and learning within the semi-CRF framework of Sarawagi and Cohen 2005.

    Downloads: 0 This Week Last Update: See Project
  • C/C++ Libraries for Bioinformatics

    The bio-cpp project provides a C/C++ library for bioinformatics.

    Downloads: 0 This Week Last Update: See Project
  • 3v: Voss Volume Voxelator

    Several RNA and protein structure volume calculation tools.

    Downloads: 0 This Week Last Update: See Project
  • Open source. Easy to use. Proven. Complete. Open source. Easy to use. Proven. Complete. Icon
    Open source. Easy to use. Proven. Complete. Icon

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    Discover HPCC Systems - the truly open source big data solution that allows you to quickly process, analyze and understand large data sets, even data stored in massive, mixed-schema data lakes. Designed by data scientists, HPCC systems is a complete integrated solution from data ingestion and data processing to data delivery. The free online introductory courses and a robust developer community allow you to get started quickly.
  • MuffinEC

    Multi-technology, INDEL aware error correction for NGS data

    MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It officially supports four technologies (Illumina, 454, ion Torrent and PacBio - experimental) and it also has a generic setup for others (old and/or new). It is released under LGPL version 3.0. MuffinEC can use multicore systems, thanks to its OpenMP implementation. We are developing the 2nd version of MuffinEC. The beta version is already available online....

    Downloads: 0 This Week Last Update: See Project
  • C++ Bio Sequence Library

    C++ Library for manipulating biomolecular sequence data.

    Downloads: 0 This Week Last Update: See Project
  • fast_count_multi

    Extremely fast NGS read counter

    ... bam_file(s) > output Requires bamtools API library at run time, and c++0x for compile. git clone https://github.com/pezmaster31/bamtools cd bamtools mkdir build cd build cmake .. make export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:path to/lib g++ -I bamtools/include/ -L bamtools/lib/ -o fast_count_multi fast_count_multi.cpp -lz -lbamtools -fpermissive -pthread -std=c++0x

    Downloads: 0 This Week Last Update: See Project
  • BioEngine

    Bioinformatic C++ library providing a central engine to other bio* libraries (BioPerl, BioPython, BioJava).

    Downloads: 0 This Week Last Update: See Project
  • Tissue Simulation Toolkit

    Tissue Simulation Toolkit is a two-dimensional library for the Cellular Potts Model (Graner and Glazier 1992; Phys. Rev. Lett. 69, 2013), which is increasingly used by computational biologists to study tissue patterning and developmental mechanisms.

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  • nullhap

    Application to estimate haplotypes and other genetics data, based on maximum likehood approach. It can handle present-absent as well as multiallelic loci.

    Downloads: 0 This Week Last Update: See Project
  • Moose

    Multiscale Neuroscience and Systems Biology Simulator

    Moose is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes. We have moved Github.com. This should be your source for the latest version of the code.

    Downloads: 2 This Week Last Update: See Project
  • biosbl

    Standard Bioinformatics Library

    set of classes used to handle input/outputs of bioinformatics data files and basic operations as multiple alignment and phylogenetic reconstruction.

    Downloads: 0 This Week Last Update: See Project
  • BN++

    A C++ Library for modelling and analyzing biochemical networks

    Downloads: 1 This Week Last Update: See Project
  • BioSimz

    The BioSimz project aims to deliver a library (as well as the interface) to conduct large-scale biomolecular simulations at their atomic scales of detail. The initiative idea is to observe the protein crowding in vivo; it now can do much more than that!

    Downloads: 0 This Week Last Update: See Project
  • BClib

    A C++ library for Bayesian computation, including a collection of more generally-applicable utilities.

    Downloads: 1 This Week Last Update: See Project
  • Downloads: 0 This Week Last Update: See Project
  • Bioinformatics Template Library

    The original Bioinformatics Template Library (BTL) uses templates to implement generic programming in same way as the Standard Template Library (STL). Biolib aims at continue developing this library.

    Downloads: 0 This Week Last Update: See Project
  • MeVisLab Community

    The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.

  • Tiler Durden

    A library in C++ for analysing landscape continuous data as if it is discrete.

    Downloads: 0 This Week Last Update: See Project
  • RasMol

    The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http://rasmol.org. It is hoped that the SourceForge OpenRasMol project will provide a convenient focal point for active collaborative contributions.

  • General Hidden Markov Model Library

    The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.

  • Flexbar Icon

    Flexbar

    flexible barcode and adapter removal for sequencing platforms

    Flexbar moved to https://github.com/seqan/flexbar The program Flexbar processes high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform. Reference: Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for...

  • Gdraw

    An app and a Perl library for genome feature drawing

    Gdraw is an genome visualization tool, including a GUI application and a Perl library. The GUI application creates the drawing interactively. It can also create the drawing by import annotated sequence files (such as Genbank, EMBL). Its backend library can be used in user-written perl scripts to create highly customized drawings.

    Downloads: 0 This Week Last Update: See Project
  • Avian Freeware Suite

    Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)

    Downloads: 0 This Week Last Update: See Project

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