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Parallel pairwise correlation computation on Intel Xeon Phi clusters
The first parallel and distributed library for pairwise correlation/dependence computation on Intel Xeon Phi clusters. This library is written in C...
... without relying on a library of known elements. It uses approximate string matching technique and protein domain analysis to detect intact LTR...
MIVF - Medical Imaging and Visualization Factory, is a framework for medical applications. It supplies a platform, in which image processing and...
The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and...
A medical information system for Windows-based systems (95-XP/CE/PocketPC) based on Open Source platforms
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The Molecular Modeling Templates, MMT is a C++ class library for molecular simulation applications. MMT serves as a code basis that can be easily...
Moose-G3 has been renamed to Moose.
Multi-technology, INDEL aware error correction for NGS data
MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It...
A tool for decomposing biochemical networks into subnetworks based on the global geometry of the network.
OOPS means Open Protein Simulator, it is a program designed to serve as a test bed for different algorithms for protein folding, dynamics and...
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OBExtensions is a extension library for the chemoinformatics library Openbabel. It provides extensions to Openbabel, being mostly GUI widgets...
PEBLS Evolutionary Biology Libraries (PEBLs) provides a framework to develop programs quickly and effectively in Java, C++, and C.
PTools : a C++/Python library for macromolecular docking
Simple static viewer of abnormal read pairs in second-generation alignment data.
Featurama, superceding ProbePicker, is a bioinformatics program used to generate short probes from large datasets for use in DNA microarray...
PeptideProphet and ProteinProphet CGI program source files modified to make interoperable with Rosetta Biosoftware's Elucidator(R) System. All...
An SQL handler to interface multiple databases data to the OpeNDAP Hyrax (BES) server. Written in C++, it uses unixODBC to query DB and can be...
Saguaro Genome-Wide is a program to detect signatures of selection within populations, strains, or species. It takes SNPs or nucleotides as input,...
Seqan is a C++ template library of efficient data structures and algorithms for sequence analysis.
Generic C++ library for the training and evaluation of predictive and classification models from data matrices as used in bio- and chemoinformatics...
Structlab is a machine learning C++ framework for structured domains, which provides a toolbox of learning methods and tools for preprocessing and...
The structural analysis library is a C/C++ portable software library for analyzing the structural properties of stoichiometric networks
Swift is an open source package for primary data analysis on next-gen sequence data "from images to basecalls". Currently Swift is targeted toward...
The Synaptic Simulator is a program which simulates models of single neuronal synapses and compartments, complex constructs of such models....
Tangerine is a protein sequence alignment tool based on cross-correlation. Its aim is to provide maximum sensitivity while being computationally efficient.