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Trelis is a graphical Monte Carlo simulation tool for modeling the time evolution of chemical reaction systems involving small numbers of reactant mol
Web application to make user-friendly requests on large XML database. Tools to XML-ize large bodies of semi-formal texts (like floras). Computer-assis2 weekly downloads
A Collection of STAR/CIF processing libraries and related tools, including sub-projects: AStar, TEStar and others...
EXtensible Instrument Processing Protocol (XIPP) is used to query, configure, and stream data between XIPP-enabled instruments and personal computers
Inter University Multi-Modal Imaging
...alignlib is a C++ library for computing and manipulating sequence alignments of protein sequences. Most of the functions and classes are exported to...
Standard Bioinformatics Library
set of classes used to handle input/outputs of bioinformatics data files and basic operations as multiple alignment and phylogenetic reconstruction.
polyglot language framework to analyze genetic data
Application to optimize DNA sequences coding protein to put in in the different organizm (f.e. human protein in E.Coli). It proposes the optimal cutti
C++ header only library with AI and bioinformatics algorithms
...C++ header only library, small and fast; Naive Bayesian Classifier, Decision Tree Classifier (ID3), DNA/RNA nucleotide second structure predictor...9 weekly downloads
Fast5 is a probabilistic file format for the storage of nucleotide and protein sequences based on hdf5.2 weekly downloads
Extremely fast NGS read counter
... ./fast_count_multi num_threads gtf_file bam_file(s) > output Requires bamtools API library at run time, and c++0x for compile. git clone https://github.com...
GRANULE is a flashcards program based on Leitner cardfile methodology for learning new words. It features long-term memory training capabilities with2 weekly downloads
This project provides visual interactive interfaces to custom algorithms used in genomes research.1 weekly downloads
...parallel bio-sequences indexing and searching library....
...A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write...
...A generic C++ library for peptide simulations....
...A C++ library for directional statistics....
Libsmm is a framework for performing inference and learning within the semi-CRF framework of Sarawagi and Cohen 2005.
...mccore is a bioinformatics data structures and tools library for efficient analysis and manipulation of RNA, DNA and protein 3D structures....
Minimum Information for Protein Functionality Evaluation (MIPFE).
Analysis of pyrograms form multiplex pyrosequencing experiments
A software for the classification of organisms based on results from multiplex pyrosequencing algorithms performed on the Pyro-Mark ID System (Qiagen)
This software solves the Phylogeny problem using Median Networks. Exact and heuristic methods available. Input: an alignment and a reversible stepmatr11 weekly downloads
Application to estimate haplotypes and other genetics data, based on maximum likehood approach. It can handle present-absent as well as multiallelic l