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pexm - JAGS module
JAGS module for the piecewise exponential distribution
...The "tar.gz" file provided for download here (installation for both Windows and Unix systems) is related to an R package called "pexm". This package is intended to install and load the new module. Details can be found in the paper https://www.jstatsoft.org/article/view/v100i08 or https://arxiv.org/abs/2004.12359 Developers: Vinícius D. Mayrink, João D. N. Duarte and Fábio N. Demarqui. Departamento de Estatística, ICEx, UFMG. -
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MANTIS R Package
Multi-locus ANTIgenic Simulator R-package for multi-strain pathogens
...For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS) At the moment, MANTIS is not available on CRAN. To build a source package of MANTIS, use the script buildPackage.R To install MANTIS use 'install.packages(file.tar.gz,type="src",repo=NULL)' To test use test_V3.3_code.R Contact the main author of the publication above for further details. Have fun! -
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gogadget
A toolbox for interpretation and visualization of RNA-seq GO analysis
...It is developed especially for the use in combination with goseq. The functions that are available in this package are extensively described in the user's guide. To install the package download the "gogadget_2.1.tar.gz" file, open R and install with the following line: install.packages( "C:/your/directory/gogadget_2.1.tar.gz", repos = NULL, type="source") The package was made in R 3.4.2 on a Windows 7 computer, and is also tested on Ubuntu. Please cite the following paper if you publish results obtained using gogadget: Nota, B. (2017), Gogadget: an R Package for Interpretation and Visualization of GO Enrichment Results. ... -
4
Penobscot River RKM Calculator
Look up in river distances in the Penobscot River drainage.
...For the purposes of this calculator, river kilometer 0 is located at 516414E 4927755N in UTM Zone 19N, near the southwest corner of Verona Island. Simply download the setup file and run it to install the program. Please contact me with suggestions to improve this program. -
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