Showing 16 open source projects for "gnome-shell"

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  • 1
    SPINA

    SPINA

    Structure parameter inference approach for endocrine feedback control

    SPINA is software for the rapid, reliable and accurate determination of constant structure parameters of endocrine feedback control systems. It is a class of static function tests that require nothing more than steady-state concentrations of hormones or metabolites obtained in vivo. The first version of this cybernetic approach had been developed for the evaluation of the functional status of the thyroid gland, i.e. thyroid's secretory capacity (gain of thyroid, GT or SPINA-GT) and sum...
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    Downloads: 7 This Week
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  • 2

    Allelome.PRO

    A pipeline to define allele-specific genomic features

    Detecting allelic biases from high-throughput sequencing data requires an approach that maximises sensitivity while minimizing false positives. Here we present Allelome.PRO, an automated userfriendly bioinformatics pipeline, which uses high-throughput sequencing data from reciprocal crosses of two genetically distinct mouse strains to detect allele-specific expression and chromatin modifications. Allelome.PRO extends approaches used in previous studies that exclusively...
    Downloads: 1 This Week
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  • 3

    bspipe

    An End-to-End Analysis Pipeline for BS-seq

    BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files...
    Downloads: 0 This Week
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  • 4
    TEACUP

    TEACUP

    TCP Experiment Automation Controlled Using Python

    TEACUP automates many aspects of running TCP performance experiments in a specially-constructed physical testbed. TEACUP enables repeatable testing of different TCP algorithms over a range of emulated network path conditions, bottleneck rate limits and bottleneck queuing disciplines. TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP...
    Downloads: 0 This Week
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  • 5
    Cygwin Ports

    Cygwin Ports

    Repository of desktops and programs for the Cygwin platform

    A large repository of open-source programs built for Cygwin, including X11 desktops, language interpreters, multimedia frameworks, cross-compiler toolchains, and much more. Also hosted here is the cygport tool for building Cygwin packages. cygport releases and the Ports Git repositories are hosted here; Ports packages are available from the website.
    Downloads: 0 This Week
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  • 6
    ncPRO-seq

    ncPRO-seq

    Non-Coding RNA PROfiling from sRNA-seq

    ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in...
    Downloads: 0 This Week
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  • 7
    Shoal

    Shoal

    A lot of fish in a shoal, in a gigantic scientific ocean.

    ...Shoal Shell Project needs grownup I'm just a student in the university, and the shoal shell just in its begining, if you have any idea about shoal, please contact me from xie.guigang@gmail.com. The Shoal shell needs your professional advice. Try get some help (if you want build the shoal library by yourself): https://sourceforge.net/p/shoal/wiki/Shoal%20Developer%20Guide/
    Downloads: 1 This Week
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  • 8

    db-megasena

    Criação/Manutenção/Utilização de banco de dados da MegaSena.

    Conjunto de scripts e aplicativos para criação, manutenção e utilização de banco de dados da MegaSena extraído de arquivo público fornecido pelo website da Caixa Econômica Federal.
    Downloads: 0 This Week
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  • 9
    The c2001 spatio-temporal mining library

    The c2001 spatio-temporal mining library

    An open source spatio-temporal data mining library

    ...The General Association Rule Mining Framework(GARMF) library, which support mining association rules from transactions(boolean, weighted, fuzzy), spatial datasets (vector and raster) and spatio-temporal datasets (raster snapshots). Besides it support incremental mining. 2. Rule Filtering Library (RFL), a library for rule evaluation. 3. Besides, DAP-Shell, a GUI shell for GARMF and RFL, will be provided. However I'll pay no more attention on it.
    Downloads: 0 This Week
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  • 10
    QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
    Downloads: 0 This Week
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  • 11

    rnasimulase

    Simulation of allele-specific RNA-seq data

    Simulation of allele-specific RNA-seq data
    Downloads: 0 This Week
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  • 12
    ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'.
    Downloads: 0 This Week
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  • 13
    In this very first part of the project OpenSpaceSyntax is a collection of functions in shall scripts oriented to the calculation of classic measures of a space syntax analisys procedure for urban fabrics and based on GIS-GRASS (grass.itc.it).
    Downloads: 0 This Week
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  • 14
    Tools to build molecular-docking activity prediction models by PLS regression with iterative training and pose-selection. Descriptors include (i) docking score(s), (ii) pharmacophore features, (iii) multi-feature descriptors learned by decision trees.
    Downloads: 0 This Week
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  • 15

    spineDTI

    spinal cord DTI pre-processing

    Shell script for spinal cord diffusion tensor imaging (DTI) preprocessing and outlier rejection.
    Downloads: 0 This Week
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  • 16
    RGnome is a gtk based frontend for GNU R, which is a widely used language for statistical computing. It features a fully working R console and an editor with syntax highlighting.
    Downloads: 0 This Week
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