Showing 8 open source projects for "clustering"

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  • 1
    dataMAPPs

    dataMAPPs

    R based pipeline for MHC-associated peptide proteomics (MAPPs) data

    dataMAPPs allows routine and efficient processing of data from immunogenicity studies applying the MAPPs peptidomics technology to detect potential MHCI- or MHC-II epitopes as presented by dendritic cells (DC). It features quality control of the raw data, across-sample/across-donor normalization and visualization of results in a heatmap style (heatMAPPs). dataMAPPs' core is a generic R library that can be tailored to specific projects via dedicated control scripts which also allow...
    Downloads: 5 This Week
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  • 2

    DACAClus

    Algoritmo divisivo de clustering.

    Algoritmo divisivo de clustering con determinación automática de componentes.
    Downloads: 0 This Week
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  • 3

    Deem

    Analyze time-course data with significance tests, clustering, modeling

    Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional...
    Downloads: 0 This Week
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  • 4
    maRt
    This is the new netbeans based RCP release! 0.8.5 beta. This tool provides an intuitive gui for microarray analysis. See here : http://www.pharma.uni-bonn.de/www/mart
    Downloads: 0 This Week
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  • 5
    clusterCons
    An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters.
    Downloads: 0 This Week
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  • 6
    NetWorkSpaces, developed by Scientific Computing Associates Inc., provides a framework to coordinate programs written in R. It allows users to write parallel programs in R easily.
    Downloads: 0 This Week
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  • 7
    Open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for clustering, pattern discovery, statistics (thru R), machine-learning algorithms and visualization
    Downloads: 0 This Week
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  • 8

    R package kOO

    implementing k-spatial entropy methodology

    The R package to be built aims at implementing what I did in a few scripts for the preparation of the papers I published in CaGEO and TGIS (see below). Basically this is related to the computation of the distribution of k co-occurrences of spatial events (generalising the contiguity distributions - 2 co-occurrences at distance 0) to derive spatial clustering statistics (mainly using the Shannon entropy, then called the k-spatial entropy) and methods linked to this: SOOk, SelSOOk (see caGEO...
    Downloads: 0 This Week
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