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TXM is a free and open-source cross-platform Unicode & XML based text analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in.
DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en
TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP...
Multi-locus ANTIgenic Simulator R-package for multi-strain pathogens
...For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS)
At the moment, MANTIS is not available on CRAN.
To build a source package of MANTIS, use the script buildPackage.R
To install MANTIS use 'install.packages(file.tar.gz,type="src",repo=NULL)'
To test use test_V3.3_code.R
Contact the main author of the publication above for further details.
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