Search Results for "u-root"

Ouress is a portable, zero-configuration Unix-like research appliance tailored to serve the priorities of the social sciences. It delivers a carefully curated, yet extensible toolkit in a single compressed filesystem (.ress archive) that runs on Linux® via chroot and on Windows® via the Windows Subsystem for Linux (WSL2). The Windows installer deploys a command-line management utility for zero-friction environment lifecycle operations. Built on Debian GNU/Linux, Ouress anchors its package...

Gravitropic response is studied in most of the laboratories working with Arabidopsis thaliana, for example, to detect new phenotypes in mutants. However, manual analysis of images and microscopy data are known to be subjected to human bias. This is particularly the case for manual measurements of root bending as the angle is set subjectively. In this context, it is essential to develop and use automated or semi-automated image analysis to produce faster, reproducible, and unbiased data. In this context, we developped ACORBA (Automatic Calculation Of Root Bending Angles), a fully automated software to measure root bending angle over time.

An open-source convolutional neural networks platform for medical image analysis and image-guided therapy. NiftyNet is a TensorFlow-based open-source convolutional neural networks (CNNs) platform for research in medical image analysis and image-guided therapy. NiftyNet’s modular structure is designed for sharing networks and pre-trained models. Using this modular structure you can get started with established pre-trained networks using built-in tools. Adapt existing networks to your imaging...

...The project addresses domain-specific challenges like segmentation, classification, detection, and multimodal data (e.g. MRI, CT, X-ray) using state-of-the-art architectures (e.g. U-Net, ResNet, GAN variants) tailored to medical constraints (small datasets, annotation costs, class imbalance). It includes Jupyter notebooks, model architectures, data preprocessing pipelines, and evaluation scripts specific to medical imaging tasks. The repository may also contain domain-specific modules: loss functions like Dice, focal loss, metrics such as sensitivity/recall/IoU, and visualization utilities for overlaying segmentation masks.