Search Results for "image"
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Showing 19 open source projects for "image"
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ACORBA
Automated approach to measure root tip angles of Arabidopsis thaliana
...This is particularly the case for manual measurements of root bending as the angle is set subjectively. In this context, it is essential to develop and use automated or semi-automated image analysis to produce faster, reproducible, and unbiased data. In this context, we developped ACORBA (Automatic Calculation Of Root Bending Angles), a fully automated software to measure root bending angle over time. -
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covid19model
Code for modelling estimated deaths and cases for COVID19
Code for modeling estimated deaths and infections for COVID-19 from "Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe", Flaxman, Mishra, Gandy et al, Nature, 2020, the published version of our original Report 13. This is the release related to our Tiers paper, where we use the latent factor model to estimate the effectiveness of tiers systems in England. Peer-reviewed version is to be out soon. All other code is still the same for previous releases. The code... -
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Data Science at the Command Line
Data science at the command line
...You’ll learn how to combine small yet powerful command-line tools to quickly obtain, scrub, explore, and model your data. To get you started, author Jeroen Janssens provides a Docker image packed with over 100 Unix power tools, useful whether you work with Windows, macOS, or Linux. You’ll quickly discover why the command line is an agile, scalable, and extensible technology. Even if you’re comfortable processing data with Python or R, you’ll learn how to greatly improve your data science workflow by leveraging the command line’s power. -
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NiftyNet
An open-source convolutional neural networks platform for research
An open-source convolutional neural networks platform for medical image analysis and image-guided therapy. NiftyNet is a TensorFlow-based open-source convolutional neural networks (CNNs) platform for research in medical image analysis and image-guided therapy. NiftyNet’s modular structure is designed for sharing networks and pre-trained models. Using this modular structure you can get started with established pre-trained networks using built-in tools. ... -
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Pydicom by examples
Basic and intermediate examples of DICOM library with Jupyter
Basic and intermediate examples to read, modify and write DICOM files with Python code using Jupyter - To install Jupyter - https://jupyter.org/install ====== All examples are based on Pydicom. An open source library - https://pydicom.github.io/ -
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SigPack
SigPack - A signal processing library using Armadillo
SigPack is a C++ signal processing library using the Armadillo library as a base. The API will be familiar for those who has used IT++ and Octave/Matlab. -
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Deep Learning for Medical Applications
Deep Learning Papers on Medical Image Analysis
Deep-Learning-for-Medical-Applications is a repository that compiles deep learning methods, code implementations, and examples applied to medical imaging and healthcare data. The project addresses domain-specific challenges like segmentation, classification, detection, and multimodal data (e.g. MRI, CT, X-ray) using state-of-the-art architectures (e.g. U-Net, ResNet, GAN variants) tailored to medical constraints (small datasets, annotation costs, class imbalance). It includes Jupyter... -
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SimpleElastix
Medical Image Registration Library
SimpleElastix is an extension of SimpleITK that comes with the elastix C++ image registration library. This makes state-of-the-art medical image registration really easy to do in languages like Python, Java, C# and R. -
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Pulse capture
Extract PPG signal from video image of the face
The application was designed for the real time contactless photoplethysmography of the human face by means of an ordinary webcam in ambient light environment System requirements: - AMD or Intel CPU with 2 cores and 2.6 GHz clock speed (or higher); - 512 Mb of RAM (or higher); - OS Microsoft Windows 10/8/7/XP, booth 32 and 64 bit versions; - A RGB webcam (Logitech B910 is the best choice). -
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jmathstudio - Java Image/Signal toolkit
Java toolkit for discrete Image and Signal processing.
JMathStudio is a Java based digital image and signal processing toolkit/library. It is simple to use, portable, light (~300 Kb), extendable and free. Full source code available at https://github.com/bhavyaajani/jmathstudio Android compatible JMathStudio is available @ https://sourceforge.net/projects/jmathstudio-android/ -
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ivl
A C++ template library extending syntax towards mathematical notation
...ivl features arrays, tuples and custom function-like objects with left-right overloading, function pipelining and function vectorization, automatic lazy evaluation, sub-arrays and other views of a single or multidimensional arrays, stl-compatible iterators, multidimensional iterators and multithreading. ivl includes a rich set of functions and operators, including operations for image processing. Seperate modules are also included. The module ivl-lina implements a linear algebra LAPACK wrapper. The module ivl-cv integrates OpenCV into ivl. -
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This is a MATLAB implementation of inverse compositional Active Appearance Models (AAMs), as described in the "Active Appearance Models Revisited" paper by Iain Matthews and Simon Baker.
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This is a Content Based Image Retrieval Interface with only color features implemented. This is part of a thesis work to analyze the different color features and observe the performance on mainly corel5k images.
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The Image Markup Tool will be an editing environment for creating TEI P5 XML files in which zones defined on images are linked to XML elements containing transcription and annotation data.
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Simple Flex4 molecule viewer for mol files. Allows to render 3D molecule models, zooming and rotating them.
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Java-based Image Server engine to organise high resolution images. The intermediate images will be generated transparently and available through defined URLs. The aim is to extended to Digital Asset Management Server
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This project defines the Simple API for Binary REpresentations (SABRE) for processing hierarchically structured, binary-oriented documents, comparable to the Simple API for XML (SAX). The library is e.g. used in the Java ISO Image Creator (JIIC).
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A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.
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