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GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.
A framework for solving large systems of linear equations (Ax=b) in a distributed network using different iterative methods. The solver is written on Java, can be run on Windows or Linux. The solver is compatible with either MPICH2 or mpj-express.