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We are developing MIRACH, a Statistical Online Model Checker for Biological Pathway Models, based on the PLTLs formalism for expressing the rules/properties to be checked. MIRACH can currently check pathways models written either in CSML or SBML.
Java-based Image Server engine to organise high resolution images. The intermediate images will be generated transparently and available through defined URLs. The aim is to extended to Digital Asset Management Server
Implementation of "online" erasure codec for Hadoop Distributed File System (HDFS). It contains native C library integrated with Java code base of HDFS.
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This is a FreeCell solitaire game solver written in the Java. It is fast and capable - it solves all of the first million Microsoft deals in about 4 hours - 99.99% of them in less than a second, and no deal takes more than 1 minute.
This project defines the Simple API for Binary REpresentations (SABRE) for processing hierarchically structured, binary-oriented documents, comparable to the Simple API for XML (SAX). The library is e.g. used in the Java ISO Image Creator (JIIC).
OpenSource Interactive Kiosk System (OSIKS) - Free information system for e-Government, public services, information and others aims. LAMP + Opera (browser in kiosk mode) + Keyboard (java virtual keyboard).
KemetLF is a Java/Swing library + DEMO which defines the Look and Feel of kemet project. This library which introduces the transcription and transliteration of egyptian hieroglyphs based on the list of Gardiner's signs (middle egyptian) - Art and Cu
Prism is a system for displaying a visual overview of the types of research being done at a given institution and to quickly connect researchers with like interests.
Maui is a multi-purpose automatic topic indexing algorithm. Given a document, Maui automatically identifies its topics. Depending on the task topics are tags, keywords, keyphrases, vocabulary terms, descriptors or Wikipedia titles.
GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.
A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.
Apellicon is a web-based administration suite for Textpresso. Textpresso is an open-source text-mining system for scientific literature. Apellicon implements all of the steps required to build and maintain a Textpresso database.
A prototype system designed to aid in the identification of handwriting, particularly medieval, following the principles outlined at http://www.digitalmedievalist.org/journal/3/stokes/ and in forthcoming publications.
This research project seeks to use compiler techniques to perform an attribute-based data-flow analysis on (MOF/UML)models allowing for a syntax-driven validation of a model's static semantics as well as an abstract interpretation of i dynamic behavior.
The Semantic Web implementation using native xml database as backend storage. A SPARQL java compiler to XQuery using Jena. There are XQuery scripts for native xml database Sedna(http://modis.ispras.ru/sedna/).
Facilitates data mining/natural language processing experiments to be executed on weblogs, such as classification, clustering and rating. As part of these experiments, it is possible to apply Latent Semantic Analysis.
DATAONTO is a protege tab widget plugin that automatically builds domain ontlogies from relational database's metadata. once ontlogies are generated,this plugin can look for changes in database metadata and implement these changes in ontology.
The Java class library, that contains classes for calculation of different mathematical relations between object and number sequences and sets: Kendall distance, Spearman distance, similarity measure, L1 distance and others.
A framework for solving large systems of linear equations (Ax=b) in a distributed network using different iterative methods. The solver is written on Java, can be run on Windows or Linux. The solver is compatible with either MPICH2 or mpj-express.
Yans is a extensible, mixed-level, Monte-Carlo Method based, discrete event network simulator. Yans is divided into interacting layers, namely: core, topology, nodes, monitors; and is driven by a config-file that describes the setup of the network.
Damon is a Distributed AOP Middleware on top of a p2p Overlay Network. Its main aim is to offer the necessary abstractions and services to develop distributed aspects, and to provide scalability to existent or new applications transparently.