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GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.
A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.
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New computer science theory. OO databases generated with TROM are as relational and normalised as you specify. Predefine queries to be executed at the click of a button, or enter ad-hoc SQL statements. TROM is the future of OO relational databases.
Apellicon is a web-based administration suite for Textpresso. Textpresso is an open-source text-mining system for scientific literature. Apellicon implements all of the steps required to build and maintain a Textpresso database.
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This is a collection of tools to analyze iClicker signals with GNURadio. It is intended purely as an educational research project, and should not be used as a replacement for iClicker classroom activities.
IMP is an automated tool for intron-flanking primer design based off of Expressed Sequence Tags (ESTs). It's intended for use in species with limited to no genomic sequence data available.
Make AsciiDoc part of your literate programming tool set. With eWEB you can weave and tangle literate programs written as AsciiDoc documents, using embedded WEB code snippets.
A prototype system designed to aid in the identification of handwriting, particularly medieval, following the principles outlined at http://www.digitalmedievalist.org/journal/3/stokes/ and in forthcoming publications.
This research project seeks to use compiler techniques to perform an attribute-based data-flow analysis on (MOF/UML)models allowing for a syntax-driven validation of a model's static semantics as well as an abstract interpretation of i dynamic behavior.
The Semantic Web implementation using native xml database as backend storage. A SPARQL java compiler to XQuery using Jena. There are XQuery scripts for native xml database Sedna(http://modis.ispras.ru/sedna/).
Facilitates data mining/natural language processing experiments to be executed on weblogs, such as classification, clustering and rating. As part of these experiments, it is possible to apply Latent Semantic Analysis.
QtXGame is an intuitive, extensible, modern cross-platform tool to construct and solve extensive and strategic games related to Game Theory. Its extensibility allows user to create and add his own games, solvers and matrix transformations.
DATAONTO is a protege tab widget plugin that automatically builds domain ontlogies from relational database's metadata. once ontlogies are generated,this plugin can look for changes in database metadata and implement these changes in ontology.
Calculates how much time and money you need to win in the lottery. It uses multiple gthreads and gtk2 to sort 1 to 50 numbers until the user wins. Asking for the cost and time beetwin games, it calculates if you or your grandchildren will be rich.
MGARCH is a software library for R-Project to simulate and estimate various MGARCH processes. This project also provides convenience tools for preparing data, summarizing and visualizing results, prediction and documentation.
The Java class library, that contains classes for calculation of different mathematical relations between object and number sequences and sets: Kendall distance, Spearman distance, similarity measure, L1 distance and others.
Yans is a extensible, mixed-level, Monte-Carlo Method based, discrete event network simulator. Yans is divided into interacting layers, namely: core, topology, nodes, monitors; and is driven by a config-file that describes the setup of the network.
Aims at providing LaTeX classes on top of beamer. Intended for students, teachers and researchers. The main library, called polyout, provides a default environment to produce articles and presentation using a single file. More at www.latexworks.org