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Showing 12 open source projects for "work"
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1
rvest
Simple web scraping for R
rvest helps you scrape (or harvest) data from web pages. It is designed to work with magrittr to make it easy to express common web scraping tasks, inspired by libraries like beautiful soup and RoboBrowser. If you’re scraping multiple pages, I highly recommend using rvest in concert with polite. The polite package ensures that you’re respecting the robots.txt and not hammering the site with too many requests. -
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easystats
The R easystats-project
easystats is a meta‑package that installs and unifies a suite of R packages for post‑processing statistical models. It delivers a consistent API to assess model performance, effect sizes, parameters, and to generate reports and visualizations, all with minimal dependencies and maximum clarity. -
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R Color Palettes
Comprehensive list of color palettes available in R
This repository is a curated collection of color palettes crafted or curated for data visualization in R. The goal is to provide designers, data scientists, and R users with aesthetically pleasing, perceptually consistent color schemes that work well for plots, maps, and graphics. The repo contains static files listing palette definitions (e.g. hex codes, named hues), sample visualizations showing how each palette performs under different contexts (categorical, sequential, diverging), and helper functions/scripts to import or use the palettes in R. The author also documents palette provenance and usage guidance (contrast, readability, colorblind friendliness). ... -
4
clusterProfiler
A universal enrichment tool for interpreting omics data
clusterProfiler is an R/Bioconductor package that provides a unified workflow for functional enrichment analysis to interpret high-throughput omics results. It supports both over-representation analysis and gene set enrichment analysis, letting you work with unranked gene lists or ranked statistics from differential pipelines. The package connects to multiple knowledge bases—such as Gene Ontology, KEGG, Reactome, Disease Ontology, MeSH and others—through a consistent interface so you can query different biological lenses without rewriting code. It is designed for breadth, covering coding and non-coding features and thousands of organisms by leveraging continuously updated annotations. ... -
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5
brms
brms R package for Bayesian generalized multivariate models using Stan
brms is an R package by Paul Bürkner which provides a high-level interface for fitting Bayesian multilevel (i.e. mixed effects) models, generalized linear / non-linear / multivariate models using Stan as the backend. It allows R users to specify complex Bayesian models using formula syntax similar to lme4 but with far more flexibility (distributions, link functions, hierarchical structure, nonlinear terms, etc.). It supports model diagnostics, posterior predictive checking, model comparison,... -
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geocompr
Geocomputation with R: an open source book
This repository hosts the source for Geocomputation with R, an open-source book covering spatial data analysis, visualization, and modeling using R. It teaches how to work with vector and raster data, coordinate systems, mapping, and geocomputation techniques using packages like sf, terra, tmap, and more. Actively maintained and updated for real-world geospatial workflows. -
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Covidex
Ultra fast and accurate subtyping tool of viral genomes.
...Capable of classifying 16000 genome sequences in less than a minute (AMD Ryzen 7 1700 8-core Processor 3 GHz) For a Web-based version of the app (only for small datasets: 100 seqs max) please go to http://covidex.unlu.edu.ar If you use Covidex please consider citing the following preprint: https://biorxiv.org/cgi/content/short/2020.08.21.261347v1 If you think my work is useful you can buy me a coffee! https://www.buymeacoffee.com/mcacciabue -
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LBopsis
THERE IS A PROBLEM WITH SOME OUTDATED LIBRARIES Work in progress!
Semi-automated workflow to quantify root bending and elongation for scanned pictures of Arabidopsis thaliana -
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bookdownplus
Use R package bookdown for writing varied types of books and documents
The package bookdownplus (Zhao 2017a) is an extension of R bookdown (Xie 2016). It is a collection of multiple templates on the basis of LaTeX, which is tailored so that I can work happily under the umbrella of bookdown. bookdownplus helps you write academic journal articles, guitar books, chemical equations, mails, calendars, and diaries. bookdown features the collaboration of many fantastic tools. However, an R beginner might be confused or depressed in struggling in the flood of LaTeX, YAML, Markdown, Pandoc, etc. ... -
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10
mathpix
Query the mathpix API to convert math images to LaTeX
Query the mathpix API to convert math images to LaTeX. -
11
DataScienceR
a curated list of R tutorials for Data Science, NLP
...The repository also shows examples of linking R with external resources — APIs, databases, and file formats — and integrating into larger pipelines. It acts as a learning scaffold for students or beginners transitioning to more advanced data science work in R, offering a hands-on, example-driven approach. The structure encourages modularity, readability, and reproducible practices, making it a useful reference repository for learners and educators alike. -
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RStan
RStan, the R interface to Stan
RStan is the R interface to Stan, a C++ library for statistical modeling and high-performance statistical computation. It lets users specify models in the Stan modeling language (for Bayesian inference), compile them, and perform inference from R. Key inference approaches include full Bayesian inference via Hamiltonian Monte Carlo (specifically the No-U-Turn Sampler, NUTS), approximate Bayesian inference via variational methods, and optimization (penalized likelihood). RStan integrates with...
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