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Showing 6 open source projects for "integrate"
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R Color Palettes
Comprehensive list of color palettes available in R
This repository is a curated collection of color palettes crafted or curated for data visualization in R. The goal is to provide designers, data scientists, and R users with aesthetically pleasing, perceptually consistent color schemes that work well for plots, maps, and graphics. The repo contains static files listing palette definitions (e.g. hex codes, named hues), sample visualizations showing how each palette performs under different contexts (categorical, sequential, diverging), and... -
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clusterProfiler
A universal enrichment tool for interpreting omics data
clusterProfiler is an R/Bioconductor package that provides a unified workflow for functional enrichment analysis to interpret high-throughput omics results. It supports both over-representation analysis and gene set enrichment analysis, letting you work with unranked gene lists or ranked statistics from differential pipelines. The package connects to multiple knowledge bases—such as Gene Ontology, KEGG, Reactome, Disease Ontology, MeSH and others—through a consistent interface so you can... -
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rollama
Wrap the Ollama API, which allows you to run different LLMs
...It supports common LLM tasks such as text generation, annotation, and embedding creation, making it useful for tasks like document analysis and data labeling. The design mirrors familiar R workflows, allowing users to integrate AI capabilities into scripts, notebooks, and data pipelines with minimal friction. It also provides flexibility to extend functionality to any feature supported by the underlying Ollama API. -
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ggthemes
Additional themes, scales, and geoms for ggplot2
ggthemes is an R package that provides extra themes, scales, and geoms for ggplot2. It supplements the default ggplot2 offerings by allowing users to apply special themes (e.g., inspired by classic publications, external visualization styles), additional scale functions, and specialized geoms or color scales. It is often used to make ggplot2 plots adhere to aesthetic styles from famous news outlets, scientific journals, or presentation decks. Additional color scales and palettes for discrete... -
Stop Storing Third-Party Tokens in Your DatabaseRolling your own OAuth token storage can be a security liability. Token Vault securely stores access and refresh tokens from federated providers and handles exchange and renewal automatically. Connected accounts, refresh exchange, and privileged worker flows included.
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Harmony Data Integration
Fast, sensitive and accurate integration of single-cell data
Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. Harmony has been tested on R versions =4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms. -
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AnomalyDetection
Anomaly Detection with R
AnomalyDetection is an R package developed by Twitter for detecting anomalies in seasonal univariate time series. It implements the Seasonal Hybrid Extreme Studentized Deviate (S‑H‑ESD) test, which reliably identifies both global and local outliers in data with trends and seasonality—commonly applied to system metrics, engagement data, and business KPIs.
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