Search Results for "mri"
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Showing 12 open source projects for "mri"
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1
TorchIO
Medical imaging toolkit for deep learning
...These transforms include typical computer vision operations such as random affine transformations and also domain-specific ones such as simulation of intensity artifacts due to MRI magnetic field inhomogeneity (bias) or k-space motion artifacts. TorchIO is a Python package containing a set of tools to efficiently read, preprocess, sample, augment, and write 3D medical images in deep learning applications written in PyTorch, including intensity and spatial transforms for data augmentation and preprocessing. Transforms include typical computer vision operations such as random affine transformations and also domain-specific ones such as simulation of intensity artifacts due to MRI magnetic field inhomogeneity. -
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VoxelMorph
Unsupervised Learning for Image Registration
...Once the model has been trained, it can rapidly compute the transformation required to register new image pairs, significantly reducing computational time compared to classical registration algorithms. The framework supports both supervised and unsupervised learning approaches and is commonly used in medical imaging applications such as MRI alignment, anatomical analysis, and longitudinal studies. -
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Medical Img Segmentation Suite
A software providing easy ways to segment structures in medical images
- 15 segmentation tools (FloodFill Strict, Adaptive Gaussian Threshold, Manual Brush (Freehand Lasso), Polygon Lasso (Click Points), Manual Bounding Box, Auto Bounding Box, Local Otsu Auto-Threshold, K-Means Clustering, Watershed, GrabCut AI, Canny Edge + Morphological Close, Morphologic Active Contours, Interactive Heatmap, Topographical Relief Map, Segment Anything AI) - Hybrid Layout (1 window with editor tools or Split-View with a preview window) - Intelligent file management (once a... -
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SimPET
A web platform for the MC simulation of realistic brain PET data
SimPET (http://www.sim-pet.org) is an open, efficient, and user‐friendly online platform for the generation of synthetic brain PET datasets. The platform offers the ability to generate realistic activity and attenuation maps from patient's PET/CT and MRI images. These maps can then be simulated, and sinograms and simulated images can be downloaded. More advanced features can be obtained by using the SimPET scripts: https://github.com/txusser/brainviset_simset https://github.com/txusser/simpet (New version pre-alpha) You can also upload your own phantoms to simulate. Currently the platform incorporates MC models for the GE Advance, GE Discovery ST and Siemens mCT. ... -
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5
x-unet
Implementation of a U-net complete with efficient attention
Implementation of a U-net complete with efficient attention as well as the latest research findings. For 3d (video or CT / MRI scans). -
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fastMRI
A large open dataset + tools to speed up MRI scans using ML
...It includes reference implementations for key MRI reconstruction architectures such as U-Net and Variational Networks (VarNet), along with example scripts for model training and evaluation using the PyTorch Lightning framework. The project also releases several fully anonymized public MRI datasets, including knee, brain, and prostate scans. -
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InVesalius
3D medical imaging reconstruction software
InVesalius is a free, open-source medical imaging application designed for three-dimensional reconstruction from computed tomography and magnetic resonance imaging scans. It converts sequences of two-dimensional DICOM images into detailed anatomical models. The software supports medical image visualization, segmentation, and measurement through an interactive graphical environment. Users can isolate tissues using threshold ranges, watershed segmentation, and manual editing tools. It provides... -
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PyVE
PyVE is image analysis and visualization environment
PyVE is image analysis and Visualization Environment focused at clinical use. At the core of it there is a powerful viewer for displaying 3D datasets (MRI, PET, CT) based on VTK. It all comes precompiled allowing painless access to Python (2.x), the ITK toolkit for image analysis, numpy/scipy for numerical calculations, Qt and PyQt4 for the development Graphical User Interfaces. It is what you need for fast prototyping and development of more complex projects. -
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MRI neonatal atlas app
Use this application to segment neonates mri brain scans
Thi application helps the segmentation of mri brain images into 6 tissue classes by using the T2 neonatal atlas available at http://www.brain-development.org. -
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MRI Atlas Application
MRI Brain atlas application
Application to use MRI brain atlases composed of template images and label images pairs. This application will segment MRI images using labels provided by the atlas. The labels are combined using the voting fusion technique. Please visit our page at http://www.brain-development.org. -
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Volumetric file viewer for the human brain. Easy, powerful and flexible fMRI/MRI brain research and clinical neuro-surgery tool. Using state of the art open VTK 3D library, the proven Qt GUI toolkit, coded in Python.
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12
SureFit generates 3D mesh surfaces (in VTK and Caret formats) from 3D structural MRI volumes (in formats such as Analyze, AFNI, raw).
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