Search Results for "markov"
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Showing 23 open source projects for "markov"
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statsmodels
Statsmodels, statistical modeling and econometrics in Python
...The package is released under the open source Modified BSD (3-clause) license. Generalized linear models with support for all of the one-parameter exponential family distributions. Markov switching models (MSAR), also known as Hidden Markov Models (HMM). Vector autoregressive models, VAR and structural VAR. Vector error correction model, VECM. Robust linear models with support for several M-estimators. statsmodels supports specifying models using R-style formulas and pandas DataFrames. -
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TensorFlow Probability
Probabilistic reasoning and statistical analysis in TensorFlow
...TFP is open source and available on GitHub. Tools to build deep probabilistic models, including probabilistic layers and a `JointDistribution` abstraction. Variational inference and Markov chain Monte Carlo. A wide selection of probability distributions and bijectors. Optimizers such as Nelder-Mead, BFGS, and SGLD. -
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Meridian
Meridian is an MMM framework
...The framework provides a robust foundation for constructing in-house MMM pipelines capable of handling both national and geo-level data, with built-in support for calibration using experimental data or prior knowledge. Meridian uses the No-U-Turn Sampler (NUTS) for Markov Chain Monte Carlo (MCMC) sampling to produce statistically rigorous results, and it includes GPU acceleration to significantly reduce computation time. -
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Kaldi
kaldi-asr/kaldi is the official location of the Kaldi project
...It provides a powerful framework for building state-of-the-art automatic speech recognition (ASR) systems, with support for deep neural networks, Gaussian mixture models, hidden Markov models, and other advanced techniques. The toolkit is widely used in both academia and industry due to its flexibility, extensibility, and strong community support. Kaldi is designed for researchers who need a highly customizable environment to experiment with new algorithms, as well as for practitioners who want robust, production-ready ASR pipelines. ... -
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pomegranate
Fast, flexible and easy to use probabilistic modelling in Python
...But that's not all! Because each model is treated as a probability distribution, Bayesian networks can be dropped into a mixture just as easily as a normal distribution, and hidden Markov models can be dropped into Bayes classifiers to make a classifier over sequences. Together, these two design choices enable a flexibility not seen in any other probabilistic modeling package. -
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CAMPARI
Software for molecular simulations and trajectory analysis
We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and... -
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ChatArena
ChatArena (or Chat Arena) is a Multi-Agent Language Game Environments
ChatArena is a library that provides multi-agent language game environments and facilitates research about autonomous LLM agents and their social interactions. -
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MLPACK is a C++ machine learning library with emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning possible for novice users by means of a simple, consistent API, while simultaneously exploiting C++ language features to provide maximum performance and flexibility for expert users. * More info + downloads: https://mlpack.org * Git repo: https://github.com/mlpack/mlpack
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Spotlight
Deep recommender models using PyTorch
...Spotlight offers a slew of popular datasets, including Movielens 100K, 1M, 10M, and 20M. It also incorporates utilities for creating synthetic datasets. For example, generate_sequential generates a Markov-chain-derived interaction dataset, where the next item a user chooses is a function of their previous interactions. Recommendations can be seen as a sequence prediction task: given the items a user has interacted with in the past, what will be the next item they will interact with? Spotlight provides a range of models. -
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Lihang
Statistical learning methods (2nd edition) [Li Hang]
...It includes notebooks and scripts that demonstrate how key algorithms such as perceptrons, decision trees, logistic regression, support vector machines, and hidden Markov models work in practice. In addition to code examples, the project contains supplementary materials such as formula references, glossaries of technical terms, and documentation explaining mathematical notation used throughout the algorithms. The repository also provides links to related research papers and references that expand on the theoretical background presented in the book. -
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SnowyOwl
RNA-Seq based gene prediction pipeline for fungal genomes
SnowyOwl is a gene prediction pipeline that uses RNA-Seq data to train and provide hints for the generation of Hidden Markov Model (HMM)-based gene predictions, and to evaluate the resulting models. The pipeline has been validated and streamlined by comparing its predictions to manually curated gene models in three fungal genomes, and its results show substantial increases in sensitivity and selectivity over previous gene predictions. Sensitivity is gained by repeatedly running the HMM gene predictor Augustus with varied input parameters, and selectivity by choosing the models with best homology to known proteins and best agreement to the RNA-Seq data. ... -
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The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.
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HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -pe TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -isize 200 -r 100 -pec (if control is PE) -ann -wig -seq –interfiles note: 1. ... -
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HMMLab
A Hidden Markov Model editor with support to HTK
HMMLab is a Hidden Markov Model editor oriented on HMMs for speach recognition. It can create, edit, train and visualize HMMs. HMMLab supports loading/saving HMMs from/to HTK files. -
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RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit against the evolutionary group that the HMM models, and it does this using through iterative database searches and incremental subsequent adaptation of the seed set.
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Igino Corona and Davide Ariu and Giorgio Giacinto, "HMM-Web: a framework for the detection of attacks against Web applications", IEEE ICC 2009. Anomaly detection of server-side web attacks based on Hidden Markov Models (unsupervised learning).
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SuperWillow is a Music Generation program. Artists have many influences which they have accumulated over the years by listening to countless pieces of music, this principle is reflected in SuperWillow.
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An utility to generate random names using high order Markov chains and several language rules which can be generated from scratch, from a word list or by randomly generating a new language from several user-defined parameters
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The Automatic Model Optimization Reference Implementation, AMORI, is a framework that integrates the modelling and the optimization processes by providing a plug-in interface for both. A genetic algorithm and Markov simulations are currently implemented.
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The Markovski project implements an interpreter/compiler for a language named Markovski, used to write Markov algorithms (see http://en.wikipedia.org/wiki/Markov_algorithm).
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MegaHAL is a 'conversation simulator' that learns as you talk to it. MegaHAL differs from conversation simulators such as Eliza in that it uses a Markov Model to learn how to hold a conversation. It is possible to teach MegaHAL to talk about new topic
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A script to generate random text using Markov chains. Output text will be stylistically similar to the training text.
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