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Showing 4 open source projects for "heatmap"
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missingno
Missing data visualization module for Python
Messy datasets? Missing values? missingno provides a small toolset of flexible and easy-to-use missing data visualizations and utilities that allows you to get a quick visual summary of the completeness (or lack thereof) of your dataset. Just pip install missingno to get started. This quickstart uses a sample of the NYPD Motor Vehicle Collisions Dataset dataset. The msno.matrix nullity matrix is a data-dense display which lets you quickly visually pick out patterns in data completion. At a... -
2
Scikit-plot
An intuitive library to add plotting functionality to scikit-learn
Single line functions for detailed visualizations. Scikit-plot is the result of an unartistic data scientist's dreadful realization that visualization is one of the most crucial components in the data science process, not just a mere afterthought. Gaining insights is simply a lot easier when you're looking at a colored heatmap of a confusion matrix complete with class labels rather than a single-line dump of numbers enclosed in brackets. Besides, if you ever need to present your results... -
3
GIPC
Geographical IP Correlation
TL;DR Version: I wrote a tool called GIPC (short for Geographical IP Correlation and pronounced Gypsy) which takes a list of IP address and returns the Geographical information you select based on the MaxMind.com GeoCity Database. The exe requires 2 inputs: The IP file (one IP per line) MaxMind GeoCity database – This can be downloaded HERE:http://geolite.maxmind.com/download/geoip/database/GeoLiteCity.dat.gz Please read more on my blog:... -
4
HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl... -
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