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An AToM3 definition of a CASE framework for creating Zope products with files in the filesystem. The framework consists of a modelling notation ZProduct and a suit of related transformations.
PyVisi is the Python visualisation interface: a generic Python-based interface to many different scientific visualisation packages. PyVisi is intended for use in both standard and high-performance computing environments, and with the escript package.
A Python and ANSI C implementation of the Edelsbrunner hyperplane arrangement algorithm described in his book Algorithms in Combinatorial Geometry, supporting arbitrary dimensions, exact rational arithmetic using gmp, and using David Avis lrs solver.
APLEpy stands for Algebraic Programming Language Extension for Python. It is an open source alternative to commercial products such as AMPL and GAMS. It offers the same high level of abstraction while keeping the advantages of using Python environment.
openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated DNA, RNA and protein sequences are stored as binary objects in a variery of relational database
QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements.
KU1K is a set of tools for 4D,5D and 6D compact U(1) lattice gauge theory Monte Carlo simulation using the Skipis-Vantzos algorithm. As the calculations involved, even for the 4D case, are consuming, the project is modular so as to run on the Grid.
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A simple, easy to use unit converter with all the most commonly used units for length, temperature, pressure, mass, speed, energy, time, area, volume, power, and much more.
DNAID software is a tool for assessing confidence in biological identifications made by comparing DNA sequences. It allows DNA sequences to be placed within a taxonomy and determines confidence in matches of a query sequence to each taxon.
Medical Image Computing Workflow (MICFlow) is a simple, easy but flexible, extensible and powerful workflow system to automate medical image computing tasks such as segmentation, registration and analysis. It's pure Python so can be used on any platform
This is a implementation of the 'enhanced Topic-based Vector Space Model' (eTVSM) using the python language. A Java-Version and maybe other java-code contributions are planned.
PyDespike is a cross platform (Windows, Mac, Linux) program written in Python using the PyQt and PyQwt libraries used to graphically process (despike) raman or other spectroscopic data in an efficient manner.
SIP (Sample Inventory Program) is a web application for managing mass quantities of lab samples. It is the first out-of-the-box Zope 3 app, and is field-proven.
SIP may be used as-is, or as inspiration for other Zope 3 apps. (e.g. O/R RDBMS storage)
yaucp, Yet another uController Project. Is a set of tools and source of code and information for developing for the AVR families of microcontrollers under Linux using only GPL-compatible tools, released under the GPL.
A collection of modules and enduser tools designed to help design, test and use system models. While my research (hence, the examples) is focused on hydro-ecological systems, the program can be used on any system characterized by ODEs (and soon PDEs?)
ScientificIcons is a central repository of icons for scientific programs, including molecular biology, lab automation, sample tracking, chemistry, biology, physiology, etc. Looking for an icon for a flask, chemical, gene, plate, robot, atom?
e-lib is a simple library management software for GNU/Linux built using Python+Postgres+Qt+Apache. Suiting the Engineering Profession, we can keep/manage records of books, periodicals, articles, funds as well as various other academic activities/events.
A mouse tracker for OS X. The tool should provide a simple way to log the user's mouse movements in the background for (later) analysis. Currently only for Mac OS X (ObjC & Cocoa), planned to make platform independent with Python. It consists out of two
Traditional but powerful cross-platform calculator. It is written in python and it uses wxWidgets as GUI (project is developed with Boa Constructor). By use of SciPy the vaCalculator can solve linear systems, do math with polynomials, integration etc.
A Open Source project with the main goal to make a simple way to display 3D objects from a Geodatabase (PostgreSQL/PostGIS) on the Web. This project was created by OpenGEO (www.opengeo.com.br).