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Showing 4848 open source projects for "can="
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LaiaMotifs
Search for MHC-like motifs in peptide collections
Search for MHC-like motifs in peptide collections (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/laiamotifs3/code/ci/default/tree/README.md -
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DockStream
A Docking Wrapper to Enhance De Novo Molecular Design
DockStream is a docking wrapper providing access to a collection of ligand embedders and docking backends. Docking execution and post hoc analysis can be automated via the benchmarking and analysis workflow. The flexilibity to specifiy a large variety of docking configurations allows tailored protocols for diverse end applications. DockStream can also parallelize docking across CPU cores, increasing throughput. DockStream is integrated with the de novo design platform, REINVENT, allowing one to incorporate docking into the generative process, thus providing the agent with 3D structural information. -
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gpt-j-api
API for the GPT-J language mode. Including a FastAPI backend
An API to interact with the GPT-J language model and variants! You can use and test the model in two different ways. These are the endpoints of the public API and require no authentication. Just SSH into a TPU VM. This code was tested on both the v2-8 and v3-8 variants. -
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ReinventCommunity
Jupyter Notebook tutorials for REINVENT 3.2
This repository is a collection of useful jupyter notebooks, code snippets and example JSON files illustrating the use of Reinvent 3.2. -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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KimBlast
Blast+ the easy way
KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md -
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CleverHans
An adversarial example library for constructing attacks
...We are currently prioritizing implementing attacks in PyTorch, but we very much welcome contributions for all 3 frameworks. In versions v3.1.0 and prior, CleverHans supported TF1; the code for v3.1.0 can be found under cleverhans_v3.1.0/ or by checking out a prior Github release. The library focuses on providing a reference implementation of attacks against machine learning models to help with benchmarking models against adversarial examples. -
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Differentiable Neural Computer
A TensorFlow implementation of the Differentiable Neural Computer
...Published in Nature in 2016 under the paper “Hybrid computing using a neural network with dynamic external memory,” the DNC combines the pattern recognition power of neural networks with a memory module that can be written to and read from in a differentiable way. This allows the model to learn how to store and retrieve information across long time horizons, much like a traditional computer. The architecture consists of modular components including an access module for managing memory operations, a controller (often an LSTM or feedforward network) for issuing read/write commands, and submodules for temporal linkage and memory allocation tracking. -
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Old Photo Restoration
Bringing Old Photo Back to Life (CVPR 2020 oral)
We propose to restore old photos that suffer from severe degradation through a deep learning approach. Unlike conventional restoration tasks that can be solved through supervised learning, the degradation in real photos is complex and the domain gap between synthetic images and real old photos makes the network fail to generalize. Therefore, we propose a novel triplet domain translation network by leveraging real photos along with massive synthetic image pairs. Specifically, we train two variational autoencoders (VAEs) to respectively transform old photos and clean photos into two latent spaces. ... -
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MutaNET
NGS Pipeline and Automated Mutation Analysis
MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance. -
Build Securely on AWS with Proven FrameworksMoving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
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Marathi MTLD tool (for GNU/Linux)
A tool for measuring MTLD score of Marathi-Devanagari text
...The program accepts Devanagari Marathi text as an input text and returns the output on the program window itself. The source code and user manual of the Marathi MTLD tool can be accessed from https://gitlab.com/priyankaD3/mr-mtld. For Windows, the executable file is available at https://sourceforge.net/projects/mr-mtld-windows -
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U-Net Fusion RFI
U-Net for RFI Detection based on @jakeret's implementation
...Additional work is being done to add custom layers to this model for further experimentation, including Squeeze/Excitation layers (unimplemented.) Sum Threshold (in fusion as an expert, and in testing as a comparison) requires the use of AOFlagger by Andre Offringa. You can find this code at https://gitlab.com/aroffringa/aoflagger. This project will use the aoflagger program within the code, so you may need to ensure that any environment variables are set for aoflagger before use. cite: https://sourceforge.net/p/u-net-fusion-rfi/wiki/cite/ -
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Practice Python
Part of my daily plan for studying Python
...Exercises commonly target strings, lists, dictionaries, control flow, functions, classes, and common algorithms, reinforcing idiomatic Python patterns. Many problems are intentionally minimal in boilerplate so you can concentrate on logic and clarity. The collection is well suited to daily practice sessions or warm-ups before tackling more complex projects. It is also friendly for learners returning to Python after time away, helping reacquire muscle memory through repetition. -
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MurExpo
Software to create an exhibition wall and hang artworks on it.
This application provides exhibition walls on which you can hang artworks (works by visual artists, student work, ...) in order to put them in a situation as in an exhibition hall. It's not software that uses 3D technology, but rather a layer-based device that you load and move around as you please. Once arranged, the works can be framed live on the wall and the exhibition space can be decorated with objects and characters. -
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ML workspace
All-in-one web-based IDE specialized for machine learning
...Easy to deploy on Mac, Linux, and Windows via Docker. Jupyter, JupyterLab, and Visual Studio Code web-based IDEs.By default, the workspace container has no resource constraints and can use as much of a given resource as the host’s kernel scheduler allows. -
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pbxproj
A python module to manipulate XCode projects
This module can read, modify, and write a .pbxproj file from an Xcode 4+ project. The file is usually called project.pbxproj and can be found inside the .xcodeproj bundle. Because some tasks cannot be done by clicking on a UI or opening Xcode to do it for you, this Python module lets you automate the modification process. The typical tasks with an Xcode project are adding files to the project and setting some standard compilation flags. -
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Machine-Learning
kNN, decision tree, Bayesian, logistic regression, SVM
Machine-Learning is a repository focused on practical machine learning implementations in Python, covering classic algorithms like k-Nearest Neighbors, decision trees, naive Bayes, logistic regression, support vector machines, linear and tree-based regressions, and likely corresponding code examples and documentation. It targets learners or practitioners who want to understand and implement ML algorithms from scratch or via standard libraries, gaining hands-on experience rather than relying... -
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RegexAssistant
Regex Windows GUI app to help learn, create,& test Regular Expressions
...RegexAssistant is great for beginners and intermediate-advanced regex users. -It helps beginners to learn regex by providing examples and token cheat-sheet. -Intermediate-advanced users can use RegexAssistant to test complex expressions. -
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PyExfil
A Python Package for Data Exfiltration
...Clone it, deploy on a node in your organization and see which systems can catch which techniques. -
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python-pcsclite
Python module wrapper for libpcsclite
PCSC lite is an I/O library for smart cards. This package provides the Python bindings for the PCSC lite libaray, thus letting you write smart card applications in Python. All available documentation can be read online at http://python-pcsclite.sourceforge.net/ -
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Trape
OSINT tool for tracking users and analyzing browser data online
Trape is an open source OSINT analysis and research tool designed to track and analyze users on the internet in real time. The project focuses on demonstrating how web browsers can reveal sensitive information about users while interacting with websites and online services. It provides researchers, security professionals, and organizations with a platform for studying how attackers could gather intelligence through social engineering techniques. The tool can clone websites and monitor interactions in order to collect data from visitors, allowing investigators to observe user behavior and session activity. ... -
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SageMaker TensorFlow Serving Container
A TensorFlow Serving solution for use in SageMaker
...If your are testing locally, building the image is enough. But if you want to your updated image in SageMaker, you need to publish it to an ECR repository in your account. You can also run your container locally in Docker to test different models and input inference requests by hand. -
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Gooey
Turn Python command line programs into a full GUI application
Gooey is a tool for transforming command line interfaces into beautiful desktop applications. It can be used as the frontend client for any language or program. Whether you've built your application in Java, Node, or Haskell, or you just want to put a pretty interface on an existing tool like FFMPEG, Gooey can be used to create a fast, practically free UI with just a little bit of Python (about 20 lines!). To show how this all fits together, and that it really works for anything, we're going to walk through building a graphical interface to one of my favorite tools of all time: FFMPEG. ... -
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deoplete.nvim
Dark powered asynchronous completion framework for neovim/Vim8
deoplete.nvim is an asynchronous completion framework for Neovim and Vim 8. It was designed to provide extensible code-completion behavior while avoiding the blocking feel of older synchronous completion plugins. The framework can display completion candidates through Vim’s built-in completion interface and can be extended with dedicated completion sources. It supports a plugin ecosystem where different languages, tools, and contexts can provide their own candidate sources. deoplete.nvim is useful for users who want configurable, editor-native completion without adopting a full IDE. ... -
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DeepMosaics
Automatically remove the mosaics in images and videos, or add mosaics
Automatically remove the mosaics in images and videos, or add mosaics to them. This project is based on "semantic segmentation" and "Image-to-Image Translation". You can either run DeepMosaics via a pre-built binary package, or from source. Run time depends on the computer's performance (GPU version has better performance but requires CUDA to be installed). Different pre-trained models are suitable for different effects.[Introduction to pre-trained models]. -
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SimSiam
PyTorch implementation of SimSiam
...The repository provides scripts for both unsupervised pre-training and linear evaluation, using a ResNet-50 backbone by default. It is compatible with multi-GPU distributed training and can be fine-tuned or transferred to downstream tasks like object detection following the same setup as MoCo.
