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IDEAIS is a enteprise service bus integration plataform for software development tools and activities. It uses Web Services (SOAP/HTTP) to integrate best of the breed software development tools (Eclipse, Subversion, Bugzilla, dotProject, vTiger).
The Negotiated Object Serialization Remote Method Invocation (NOS-RMI) allows clients to call methods on objects that run on a server. It is simpler than CORBA or JavaRMI, but unlike XML-RPC it has a concept of objects.
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An MMORPG using the Multiverse Platform (www.multiverse.net). This project includes game logic code and art assets. Note that the Multiverse server libraries itself is NOT open source.
Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.
GUESS, or the Graph Exploration System, is a system and language for visualizing and manipulating graph structures and creating new visualization applications.
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adVM aims to provide a flexible engine for creating adventure games. The new version is written in java and uses ADL (see http://www.hcesperer.org/adl/) as the scripting language.
This is an experiment in creating the best database API I can come up with. It is an alternative to query languages. The latest version is being written in Scala using Berkeley DB Java and will run on the Java VM.
NetWhistler is SNMP monitoring software that offers integrated fault and performance management functionality. This Java program auto-detects networks and presents them on graphical maps, which reflect host status. Mila NNM is a pyQT fork of Netwhistler.
The CCM Tools are CASE tools used for generating CORBA components, test components, and test programs based on source IDL files. Various target languages can be generated. Scripting language wrappers can also be generated to enable rapid prototyping.
Java Hibernation Package is an experimental implementation of Java thread serialization mechanism based on the Java Platform Debugger Architecture (JPDA). It is designed to support serialization of synchronizing multiple threads.
Dimenso is a library of numeric types for .Net and Java, that obey dimensional analysis and permit calculations with physical quantities. Due to the lack of C++ - like templates with numeric arguments, code generation is employed using Python.
Platform-independent C-API library implementing the Record-JAR file format, with mappings to other languages/technologies, including C++, COM, D, .NET, Python, Ruby, and STL.
PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
DrPangloss is a python implementation of a three operator genetic algorithm, complete with a javaswing GUI for running the GA and visualising performance, generation by generation
GRINEdit is a graph, relation, interaction, network editor.
The graph visualizer 'graphviz' is very popular but it is not interactive.
The project aims to make interactive graphviz.