Search Results for "python shell" - Page 8
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Showing 563 open source projects for "python shell"
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in... -
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netool toolkit 4.6
MitM pentesting opensource toolkit
Operative Systems Suported are: Linux-ubuntu, kali-linux, backtack-linux (un-continued), freeBSD, Mac osx (un-continued) Netool its a toolkit written using 'bash, python, ruby' that allows you to automate frameworks like Nmap, Driftnet, Sslstrip, Metasploit and Ettercap MitM attacks. this toolkit makes it easy tasks such as SNIFFING tcp/udp traffic, Man-In-The-Middle attacks, SSL-sniff, DNS-spoofing, D0S attacks in wan/lan networks, TCP/UDP packet manipulation using etter-filters, and gives... -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic, sequence... -
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OpenNode is a open source server virtualization solution providing easy to use bare-metal ISO installer. It's based on CentOS and supports both OpenVZ container-based virtualization and emerging KVM full virtualization technology on the same host.
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MultiPlink
[UPDATE 28-10-2015] FINAL MULTIPLINK SSH LIFETIME v2.0 UP-5 "FAREWELL"
Download Link Utama: http://sourceforge.net/projects/multiplink/files/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar/download Jika di Halaman Download, Link belum tersedia, klik link alternatif : https://www.dropbox.com/s/znptxp2gxhihpax/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar?dl=0 Lalu Download & Install juga Minor... -
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RPSTIR
Relying Party Security Technology for Internet Routing
This project has been moved to https://github.com/bgpsecurity/rpstir. However, the mailing lists are still hosted here. -
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Pootle, Virtaal & Translate Toolkit
Localization tools built by localizers for localizers
Tools for localization: - Pootle: web based translation management system. - Virtaal: Computer Aided Translation (CAT) tool. - Translate Toolkit: QA, format conversion and support (PO, Java .properties, OpenOffice, Mozilla, XLIFF, TMX, TBX, CSV, Qt .ts). -
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pyDxCluster
pyDxCluster is python (tk) HAM Dx Cluster for Linux users
pyDxCluster is python (tk) HAM Dx Cluster for Linux users Feautres: - connect to any cluster server - connect to any reverse beacon server - connect to PSKReporter server - send spot - band selecting - send/receive data (callsign, frequency) to/from FlDigi with fldigi-shell - send command to cluster - save all data to config (host, port,username,password, bandselections, QRZ .com username and password, and alll window positions) - if you registred qrz.com, Qrzcq.com or hamqth.com user... -
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dotCODES_Source_Control_for_VS
The dotCODES Source Control Maintenance Mainframe (SCM2)
The dotCODES Source Control Maintenance Mainframe for Visual Studio is an administrator console application for developing dotCODES components. Built upon a Python foundation, the program is used to create data center routines (Unix packages) and maintain enterprise cloud services (CGI scripts/Apache) by means of building dotCODES runtimes and deploying them to and from the client server. -
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Salstat2
statistical package designed for the end user, multiplatform
Salstat2 is an statistical package written in python and designed for the end user It has a graphical user interface and also it is scriptable, It's multiplatform, It has a graphic system inherited from matplotlib, It allows you to use different libraries like numpy - for numerical calculations, it also lets you to interact with Microsoft Excel (R) by using a com client under windows(R) platform and finally you can create your own dialogs by using the interactive shell or the script panel. -
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organon
This program focuses on automating the download, installation and compilation of pentest tools from source
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
... to virtually any text collection, language, and MWE type. It is a command-line tool written mostly in Python. Its development started in 2010 as a PhD thesis but the project keeps active (see the SVN logs). Up-to-date documentation and details about the tool can be found on the mwetoolkit website: http://mwetoolkit.sourceforge.net/ -
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memesa-tools
A collection of tools used in the enumeration of solution spaces
This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function. -
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Debox GNU/Linux Live CD
Debox Linux is a live distro based on Debian distribution and Openbox
Debox GNU/Linux Live CD is a live hybrid distribution based on Debian and OpenBox. Can be used on computers supporting 32-bit (x86) or 64-bit (x86_64) instruction set architectures. Debox was made with the middle and novice user in mind. Includes a wide range of software: word processor, media players, internet browser, email client, disk utilities, java and few games. Also, a plenty of printers, scanners, bluethooth, web cams, digital tv, fax are supported by default. Different... -
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Jack the Stripper
Perform automated MITM (Man In The Middle) attacks.
ENGLISH: Jack the Stripper uses iptables, Ettercap and SSLStrip to intercept data between two connected targets (IP addresses). The victims's ARP tables must be poisoned by Ettercap, that means Jack the Stripper works only on local networks. PORTUGUÊS: Jack The Stripper utiliza iptables, Ettercap e SSLStrip para interceptar dados entre dois alvos (endereços IP) interconectados. As tabelas ARP das vítimas devem ser envenenadas pelo Ettercap, isso significa que Jack The Stripper funciona... -
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vEMan - VMware ESX/ESXi Manager
An unofficial VMware® ESX/ESXi Manager for Linux
vEMan - [v]Mware [E]SX [Man]ager provides a GUI for managing ESX servers natively from within your Linux desktop without the need to use Windows vSphere® anymore! Support vEMan development for v2.0 by gofundme! http://www.gofundme.com/vEMan Why I started vEMan? Because I hate it to start my Windows VM to manage ESX(i) servers ;o) vEMan is (maybe) not needed if you use vCenter 5.x: http://kb.vmware.com/kb/2005377 --> vSphere >= v5 has a "web client" BUT keep in mind that there are... -
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XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
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Community Linux
USB Drive Writable Linux Distribution
Community Linux is a USB drive based fully functional writable Linux Distribution. It boots and runs with a comparable speed as a hard drive installation. Community Linux allows one to create a low cost solid state development and production platform. For new ComLin drive creation, one needs to download the full install (comlin-016.tar.gz) ... (not just the scripts) Update: Community Linux will now run on most every machine. Update: Added Sound drivers, Intelligent... -
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ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
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**(9 march 2016) this project is continued on github : http://jaapkroe.github.io/polypy ** Python script to analyze (shortest-path) rings in structures read from xyz-files. It can be useful for example to identify defects in crystal structures or molecules.
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It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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Stat cvs/svn Code Change
stat. cvs,svn code changes and generate html report
It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. -
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SAS008
investigations & entertainment
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openSEQ
NGS compute distro proloaded with pipeline analysis software
.... The first homepage tab links to our pipeline constructer. The second homepage tab links to a xterm session on the client. Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk
