Showing 201 open source projects for "workflow"

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    Cloud-based help desk software with ServoDesk

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    MongoDB Atlas runs apps anywhere

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  • 1
    Import from github_com

    Import from github_com

    Python module finder/loader from github, like in golang

    import_from_github_com is a playful yet practical experiment that lets you import Python modules directly from GitHub using an import-like mechanism. The idea is to remove the friction of “clone → install → import” when you just want to try out a single file or small repo. It hooks into Python’s import machinery so that when you reference a GitHub path, it fetches the code, stores it locally (often with caching), and makes it importable in the current environment. This is helpful for...
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  • 2

    GASiC

    Genome Abundance Similarity Correction

    ...You can find the accompanying paper here: http://nar.oxfordjournals.org/content/41/1/e10.short Thanks to the great work of the SeqAn team, you can now use GASiC as a Knime workflow: https://github.com/seqan/knime_seqan_workflows/tree/master/metagenomics_gasic_workflow
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  • 3

    Valence

    Fast, Dynamic, and Extendable/Mergeable Workflow Management System

    Agile protocol development and workflow management of pipelines. Simple enough for a low barrier of entry, but powerful enough to manage large procedures. Includes APIs in Python, Ruby, Java, and Perl to assist in the creation of Drivers that can create new workflows on the fly. Greatly facilitates merging and extending pipelines between groups/developers.
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  • 4

    PyWorkflow

    Simple workflow engine written in Python to manage program executions.

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  • AI-powered conversation intelligence software Icon
    AI-powered conversation intelligence software

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  • 5

    iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.
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  • 6
    The pyARS python module allows developers to use BMC's ARSystem (Remedy ARS) and Atrium CMDB functions from within Python. Using Python's interactive shell, it is extremely easy to retrieve and modify data entries as well as workflow objects. ARSystem, also known as ARS or Remedy, is a powerful enterprise workflow engine. Atrium is a Configuration Management Data Base, a.k.a. Installed Base built on top of ARSystem.
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  • 7
    Ratnode

    Ratnode

    Ratnode - A Flexible, Fast and Fun, Ticket and Process Tracker

    Ratnode is a fun, easy, flexible, colorful, scalable and touch screen (tablet) ticket tracking system for personal and business processes. Written in Python, with a MySQL database, Ratnode is efficient on resources and easy to for the average user to install and maintain. Ratnode's colorful displays provide accurate "work in process" prioritization and cartoon-like icons make the usual drudgery of ticket and process tracking a tolerable feat for the Homo Ludens in all of us. In other...
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  • 8
    Optimal BPM

    Optimal BPM

    The beat of your business

    [See the files section for installation instructions] Optimal BPM™ is a project that aims to create an easy-to-use Business Process Management system (BPM) and tools. So far, only the tools, and only a data replication tool, Optimal Sync, has been released (available from the "files" page). But more is coming. It incorporates many different open source projects that relates to interoperability, transformation, context and process control. It has no business engine, instead it...
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  • 9
    Pathomx

    Pathomx

    Workflow-based data analysis built on IPython

    Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis.
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    Inventors: Validate Your Idea, Protect It and Gain Market Advantages

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  • 10

    Dual-Boot Filename Filter

    Sustain data readibility in a dual-boot Windows-Linux environment

    The Dual-Boot Filename Filter makes it easy to sustain data readability in a dual-boot Windows-Linux environment, or even when you want to write your data to a disc. Windows have much stricter rules for file naming than other operating systems, so it is not always easy to create data on Linux, which will be read in Windows. Even burning discs can be tiresome, if they have to be readable in both environments. Common disc burning programs are able to rename your files if their name do...
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  • 11

    Erda

    Workflow automation of Thomas networks

    This script is supplementary to the article "Time series dependent analysis of unparametrized Thomas networks" and performs the workflow steps described in section 7.
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  • 12
    SeqSelector

    SeqSelector

    Tools to select sequences for capture enrichment of next-gen libraries

    The SeqSelector toolset is a suite of user-friendly, platform independent python scripts to facilitate selection of sequences for targeted enrichment of next-generation libraries through hybridization-based sequence capture. The scripts require no knowledge of programming, and can be applied to genome sequences of model or non-model species. We suggest a workflow in which genes of interest are first identified from previous studies and publicly available datasets of functional gene annotation. Once a list of candidate genes has been identified, their sequences are selected from the reference genome. These sequences are used as a query during a BLAST search of the unannotated genome of a non-model species, and then the corresponding sequences are returned, which can be used to design baits for hybridization-based sequence capture.
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  • 13

    RainforestCluster

    Dynamically manage Amazon EC2 clusters

    RainforestCluster is an Amazon EC2 python program that manages and load-balances dynamic clusters to allow for maximum workflow flexibility and speed at minimal cost. It enables one to quickly and cheaply create dynamic compute clusters in the cloud, which can then run computational pipelines generically. It is also able to optimize the use of spot instances - idle computers in Amazon's cloud that are available at drastically reduced cost (5x-10x cheaper) - but can be terminated at any moment if capacity drops or the bid price rises. ...
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  • 14
    A command-line interface for the OpenGroupware Coils collaboration platform and OIE workflow solution. Using snurtle you can manage and examine the content of your Coils server as well as manage workflows all from a convenient command line interface
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  • 15
    Felix Felicis

    Felix Felicis

    Felix Felicis (aka liquidluck) is a static blog generator in python

    ...The generator supports live previews and incremental builds so content changes reflect quickly, and it includes built-in support for features like pagination, RSS feeds, and code syntax highlighting to suit developers. It is aimed at creators who want to author content in a lightweight workflow without heavy CMS overhead and still maintain full control over markup, design, and deployment. Because the ecosystem is Ruby-based, it integrates into developer toolchains, CI pipelines, and can deploy to GitHub Pages or any static host.
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  • 16
    GTKRawGallery
    GTKRawGallery is a workflow oriented photo retouching software for camera raw image development. It is also a versatile photo manager for popular image formats.
    Downloads: 4 This Week
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  • 17
    Booktype

    Booktype

    Open source platform to write and publish print and digital books

    Booktype makes it easier for people and organisations to collate, organise, edit and publish books. Delivering frictionlessly to print, lulu.com, and almost any ereader, Booktype facilitates collaborative production processes. No more lost manuscripts, overwritten Word files, awkward wikis or cumbersome CMSes.
    Downloads: 4 This Week
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  • 18
    Everpad

    Everpad

    Evernote client well integrated with linux desktop

    Everpad is a desktop integration layer that brings Evernote notes directly into the Linux environment, especially Ubuntu-based desktops. It runs a background service that syncs with your Evernote account and exposes your notes through an indicator applet and a Unity lens/search integration. The goal is to make Evernote feel like a native part of the desktop, so you can search, open, edit, and create notes without jumping to the web interface. It also supports note attachments, notebooks, and...
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  • 19
    intelligence

    intelligence

    What happens if you cross artificial intelligence with 3D

    This Project will make the attempt to cross artificial intelligence Algorythms and common 3D workflow. Usually many operations in 3D workflow are highly retundant and often actions have to be repeaded several times or instead being executed in selfmade scripts.Scripting is in fact for most people a very nasty and time consuming action. This application module tries to fill the gap where it lerns workflows which can in order be modified, multiplied, adapted organically to allow a fast and versatile Workflows, where currently rigit working habits will not Compete. ...also making scripting finally obsolete. ...
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  • 20

    colonyzer image analysis software

    Image analysis estimating cell density in arrayed microbial cultures

    Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 http://dx.doi.org/10.1186/1471-2105-11-287 Addinall et al. 2011 http://dx.doi.org/10.1371/journal.pgen.1001362 Chang et al. 2011 http://dx.doi.org/10.1534/g3.111.000216 Banks et al. 2012 http://dx.doi.org/10.3791/4018 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster: https://github.com/CnrLwlss/Colonyzer
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  • 21

    Ogre

    Outil de Gestion de Recherche d'Emploi

    The aim of this tool is to help people managing their job seeking. The software will include document management (CV, application letter ...) and a workflow for job seeking.
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  • 22
    Sked
    Sked is a personal organizer, calendar, schedule and braindump application with a wiki-like syntax for text formatting and organization. It is easier think of it as the merge of a calendar with a desktop wiki.
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  • 23
    Imbolc is a client application of the OpenGroupware Coils collaboration server for managing tasks and to-do lists. Imbolc supports off-line operation and synchronization via Coils' JSON-SYNC protocol.
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  • 24
    This is a Django based application for creating database backed or email forms. It features an innovative drag and drop interface for building forms, a workflow for reviewing forms, and infinite customization. As of 12/1/2013, primary development has moved to http://github.com/carsongee/formunculous
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  • 25
    BizMin - Business Administration Tool
    A Web Based Business Administration Tool. The system will control's everyday functions in a business. This project comes with some Base Plugins such as Business Card Generation, Employee Scheduling, Retail label Printing, An internal Email system
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