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Tandem mass spectral peptide identification and validation software, similar to X!Tandem, OMSSA, MyriMatch. Suitable for single hosts through large clusters. Written in Python for simplicity, with performance-critical sections in C++.
Removes registry keys and files based on the compare log provided by RegShot. It's primary design is to remove keys left over by applications trying to track usage. There is also an option to generate an NSIS script which can be used by System Administr
This project implements an algorithm for segmenting protein sequences into smaller meaningful blocks. The method is based on the pure statistical approach and it uses an analogy between proteins and natural language.
ImapGrab is a cli and gui program (written in Python) that allows you to log into an IMAP server, list mailboxes, and download selected mailboxes to mbox or maildir files. It requires getmail 4.8.2 or higher. The gui requires PyGtk 2.0 or higher.
Simple yet sophisticated, jiffy is a Python-based timesheet application. It features a commandline interface where you just type in what you're doing. On request, jiffy will produce a fully editable timesheet which can be printed, emailed or uploaded.
AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.
CitySpeed is a Python package that uses online mapping services to gather statistics on the efficiency and complexity of road networks. This can be used to create maps showing how fast you can drive around a particular city.
cfv is a utility to both test and create .sfv(Simple File Verify), .csv, .crc, md5sum, bsd md5, sha1sum, and .torrent files. cfv also includes test-only .par and .par2 support. These are commonly used to ensure the correct retrieval or storage of data
Python implementation of Markdown. The project can be found at https://pythonhosted.org/Markdown/. Bugs can be reported at https://github.com/waylan/Python-Markdown/issues. This site is only used for the discussion list.
There are a lot of create commandline tools out there. But many of them are only using one core of a multicore system. With the parallel runner tools you can easyly start one application per core.
Tools to perform metabolic control analyses on biochemical network models in SBML format. Allows computation of first and second order response coefficients, elasticities, first order control coefficients and first order spectral response coefficients.
The ZoomifyImage product allows you to use Zoomify (http://www.zoomify.com/) from the commandline and within the Zope environment to quickly and interactively view large, high resolution images over the Web.
XGngeo is a full-featured GTK2 frontend, written in Python, that provides to end users a practical and user-friendly interface over GnGeo which is a fast and powerful commandline Neo Geo emulator for the Unix platforms.
A small simple utility to replace UUID's in a file with new ones, preserving any internal references. It was initially motivated by a wish to copy Visual Studio projects and WIX fragments.
A java Diplomacy program capable of resolving orders, with a dumb AI. Usable from either a GUI or a CLI. Was being rewritten in python, that stopped. Also includes a completely separate python version that supports star trek dip (variant bank st02)