Search Results for "input file" - Page 4
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Showing 112 open source projects for "input file"
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at http... -
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Mezmory helps you to mezmorize... I mean memorize... long passages, whether scripture, poems, speeches, songs, or anything you care to remember. You just type the text, and if a word is correct it stays. Input any text file you like.
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade... -
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simplex with branch and bound
A tool for teaching simplex and branch & bound methods
This is a tool for teaching simplex and branch & bound methods. For simplex method, it comes with several examples including degeneracy and cycling, and allow the user to dictate how to pivot. For branch and bound method, it is desinged to interact with the user to explore all possible branch and bound trees. The user can also load a problem from a text file or simply type in a model directly. The format is very simple and very similar to the LP format, see the packed-in examples. -
A new approach to fast data transfer | IBM AsperaIBM Aspera takes a different approach to tackling the challenges of big data movement over global WANs. Rather than optimize or accelerate data transfer, Aspera eliminates underlying bottlenecks by using a breakthrough transport technology that fully utilizes available network bandwidth to maximize speed and quickly scale up with no theoretical limit.
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File based backup 52
Content Based File level Data Backup in Python
Content Based File level Data Backup in Python. This is a utility to backup your files. It can do full and incremental backups. It will take a directory as input, and will back up the files in that folder and all sub-folders to the backup destination directory. It can compress each file individually while backing-up. Mirrors the source directory structure under the target directory. Creates 1 archive file for each source file. Even if the backup/restore program or backup database... -
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DataCopy For SQLServer
Data Copy tool for SQL Server and Oracle
Migrate your data from SQLServer to Oracle without creating single dump file. Input is a SQLServer query file defining dataset you want to copy to Oracle. Target table has to exist for copy to go through. Turbo mode offers 5x copy performance improvement. -
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Importer library to import assets from different common 3D file formats such as Collada, Blend, Obj, X, 3DS, LWO, MD5, MD2, MD3, MDL, MS3D and a lot of other formats. The data is stored in an own in-memory data-format, which can be easily processed. www.open3mod.com/ is a 3D model viewer and exporter based on Assimp that is also Open Source.
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Hg Diff Latex
Create a diff pdf for a .tex file with inclusion from hg revision
This python file creates a diff pdf file which contains the diff between the current files and a given revision or the last committed version. I takes an input main file and checks the diff for all the files included in the main file. Currently only supports hg repositories, though if there is any request for git, I'll try and add it. -
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FineSplice
Enhanced splice junction detection and estimation from RNA-Seq data
FineSplice is a Python wrapper to TopHat2 geared towards a reliable identification of expressed exon junctions from RNA-Seq data, at enhanced detection precision with small loss in sensitivity. Following alignment with TopHat2 using known transcript annotations, FineSplice takes as input the resulting BAM file and outputs a confident set of expressed splice junctions with the corresponding read counts. Potential false positives arising from spurious alignments are filtered out via a semi... -
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EnigmaGPG Community
Sending encrypted data through internet web applications.
Enigma GPG Community allows you to encrypt / sign text and attachments using plugins in browsers, to send encrypted information via any Internet application that can only be understood by the intended recipient ensuring the authenticity, privacy and confidentiality of messages between the sender and receiver . Note the utility that can achieve this project because it aims to meet the global need for privacy on the web. Also applies to any web application that allows text input by the user... -
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CollectD-CSV Plotter
Web interface for visualizing CSV data from CollectD monitoring system
CollectD-CSV Plotter is a web interface for fetching and visualizing data that is saved in CollectD CSV format. An HTML form is used for defining the time interval and choosing the wanted measurements. The plotter is actually a front-end for collectd-csv module (http://pypi.python.org/pypi/collectd-csv/), which it uses for fetching the data. Technologies CollectD-CSV Plotter uses include CGI/Python, HTML5/JavaScript, jQuery, jQuery-UI and Gnuplot. -
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Data Ninja
A document clustering system with search & report generation features
... term and gives similar documents to these. The 2nd feature gives each sentence containing the search term from documents found. The report generation feature specifically for use by audit companies takes an audit report as an input and outputs an insight log and draft management letter with insights pulled from the report. This feature can be customised to suit a company's requirements. This software works with pdf, docx, txt and csv files and the zip file must be saved in "My Documents". -
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dAnalytics
dAnalytics is a software made for education in discriminant analysis.
dAnalytics is a software made for educational purposes to work with discriminant analysis. It's a very simple calculator over bi-dimensional populations. You input a file with two columns (one for each variable) and tryout different separations of populations (blue and red) and analyze it's efficiency by observing the eigen value result for the attempted separation. It also gives many information about the statistics both of the input and the separated populations. There's a documentation... -
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Charm is a full-featured, cross-platfom blogging client for LiveJournal, Atom (Movable Type, Blogger), and MetaWeb (WordPress). It is console-based, all-text, and can be used entirely from the command line. It is written in Python.
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SpiKeDeteKt
An automatic spike detection program to be used with new KlustaKwik
This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs... -
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Python Script to process a wave file and transform to movement (key frames) on Blender 2.5. Input: sound file (.wav) Output: Key frames direct into the selected object Work to meshes and bones (location, scale or rotation in any axis)
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Spondulas
Spondulas is browser emulator designed to retrieve web pages for hunti
Spondulas is browser emulator and parser designed to retrieve web pages for hunting malware. It supports generation of browser user agents, GET/POST requests, and SOCKS5 proxy. It can be used to parse HTML files sent via e-mail. Monitor mode allows a website to be monitored at intervals to discover changes in DNS or content over time. Autolog mode creates an investigation file that documents redirection chains. The retrieved web pages are parsed for links and reported to an output file. More... -
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pyscope
Software oscilloscope using Python and tkinter
Software oscilloscope using Python and tkinter. Supports multiple sources: socket, file, audio, USB. Displays data by samples, time or frequency. Scales the input automatically or manually. It has been renamed "pdatascope" to avoid a name-clash with Pyscope, a scoping package on PyPi. See https://sourceforge.net/p/pydatascope/ for the latest code. -
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CAD Scripts project is designed to automate the work of CAD Softwares. Here you will find scripts/softwares which help to do tasks easily. E.g- Specify coordinates of figures in input file and get output dxf file without actually drawing anything.
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Noisy Channel Simulator
Demonstrate errors in transmission of a file over a noisy channel.
This program was written to dimonstrate errors in transmission for a presentation on Claude Shannon's Noisy Channel Coding Theorem. It takes an input file, the probability of a bit being flipped, and, if specified, the size of the header of the file. The program was intended to take monochrome bitmap files as input, so that each bit refers to a pixel in the image and thus, it would be easy to see errors in the output file, as some of the pixels would be flipped; however, it will work on any... -
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ndexr
Indexes directories and outputs to JSON
Tool to use from Python interactive interpreter or script. Use it to make JSON indexes of all files in a directory, or files of a certain type. Could be used to observe activity in a server directory, to generate JSON to send to clients searching remotely, or to keep an index of files in a directory when the user of that directory does not have permission to probe the files system for files without knowing their names. Uses a configuration file, or optionally you can pass configuration... -
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The csvdatamix project aims to randomize CSV input data files in order to conceal the original state of the data. Similar to data masking or data transformation. Also has mapping abilities to translate back to the original state of the data.
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This a py/gtk interface for liquidsoap designed to manage streams to a streaming server.
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Wizard-like software to manage a scientific repository (articles or any digital document). Citation information(BibTeX) is automatically corrected. From the repository, get copies of items, list of references+citations. NEW:handles real documents.
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