Search Results for "python tool" - Page 34
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Showing 1829 open source projects for "python tool"
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MicrobeGPS
The Explorative Taxonomic Profiling Tool for Metagenomic Data
MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily. -
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Analyzer for Files
A tool to look into file contents
Analyzer for Files (AoF) is a tool to look into file contents, analyze the structure with installed plug-ins, and show the results with several split windows including converted data and a tree if successful. It was designed as a workbench with a core and plug-in extensions. It can handle the normal plain-text file and data, complex binaries supported with the corresponding plug-ins. What's more, the developers can deploy and release their own plug-ins according to the plug-in developing... -
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This (Python) tool allows you to easily create FPGA bitfiles for your embedded system, from several Open Source IPs (compatibles with the OpenCores Wishbone bus) . It will also generates the corresponding drivers (currently only Linux ones).
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pipasic
pipasic: Protein Abundance Correction in Metaproteomic Data
... in the analysis of metagenomic samples and require specific solutions. pipasic (peptide intensity-weighted proteome abundance similarity correction) is a tool which corrects identification and spectral counting based quantification results using peptide similarity estimation and expression level weighting within a non-negative lasso framework. pipasic has distinct advantages over approaches only regarding unique peptides or aggregating results to the lowest common ancestor. -
Picsart Enterprise Background Removal API for Stunning eCommerce VisualsWith our Remove Background API tool, you can access the transformative capabilities of automation , which will allow you to turn any photo asset into compelling product imagery. With elevated visuals quality on your digital platforms, you can captivate your audience, and therefore achieve higher engagement and sales.
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... is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
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irit_diff_sequences
Python tool to create lifespan sequences from Wikipedia edits history
A Python tool which produced lifespan sequences from edits history. The tool is first developed for the Wikipedia edits history but can easily be adapted for others applications. From a database containing for each article its list of revisions, produce one csv file per article containing authored sequences and lifespans. Output format: i,j,lifespan,author with - i : begining of the chars sequence - j : end of the chars sequence - lifespan : number of edits the sequence has survives... -
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dhcpclientsimulator
Both a DHCP client simulator and a DHCP attack tool.
#DHCP Client Simulator For the DHCP client simulator mode, assuming there is an active DHCP server on the network, the user can choose to simulate any number of DHCP clients. All DHCP leases obtained from the server are saved in the DHCP_Leases.txt file, which is automatically generated by the program. The user can also release the leases received from the server, either one by one (by IP address) or all of them at once. After releasing all the addresses, the DHCP_Leases.txt file is... -
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*WARNING* gtburst moved to github (https://github.com/giacomov/gtburst). ########################################## gtBurst is a tool to download data, analyze and simulate Gamma-ray Bursts and Solar Flares as observed by the NASA Fermi satellite.
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isbntools
A command line tool to extract, transform and get metadata for ISBNs
As of 2015-06-02, this project is no longer under active development. -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade... -
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StoryText (formerly PyUseCase) is an unconventional GUI testing tool, with support for PyGTK, Tkinter, wxPython, Swing, SWT and Eclipse RCP. Instead of recording GUI mechanics directly, it asks the user for descriptive names and hence builds up a "domain language" along with a "UI map file" that translates it into the current GUI layout. The point is to reduce coupling, allow very expressive tests, and ensure that GUI changes mean changing the UI map file but not all the tests. Instead...
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MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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EasyRepo
Offline DVDs software repository builder for Ubuntu and derivatives
Easy Repo is a GUI tool for create APT repository on DVD disks for your Debian/Ubuntu system. It can be usefull to use Ubuntu Software Center without an internet connectivity. Program is written in python/GTK+ and considered to be portable to win/mac as well. -
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CONTIGuator is a Python script for Linux environments whose purpose is to speed-up the bacterial genome assembly process and to obtain a first insight of the genome structure using the well-known artemis comparison tool (ACT).
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CCH
A genetics tool that identifies genomic regions of shared ancestry
Combinatorial Conflicting Homozygosity (CCH) uses dense Single Nucleotide Polymorphism (SNP) genotypes to identify regions of the genome inherited from a common ancestor among any or all subsets of a group. Analysis is rapid and can identify loci containing genes for dominant traits. CCH is robust to the presence of phenocopies and can detect undisclosed shared common ancestry. The associated publication regarding CCH may be accessed... -
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LipidWrapper
Create lipid-bilayer models of arbitrary geometry.
..., is capable of creating curved membrane models with geometries derived from various possible sources, both experimental and theoretical. We are hopeful that this utility will be a useful tool for the computational-biology community. -
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Robo-Interface
Robo-Interface is a GUI for Robocopy (Robust File Copy).
Robo-Interface is a GUI or user interface for Robocopy the command line tool from Microsoft and includes all the switches except /UNICODE :: output status as UNICODE. It will build the command string that you can copy and paste on the CMD (Command Prompt), or you can also run it from the application by clicking on the button "Run CMD" or copy the command string to the clipboard by clicking on the button "Copy". You can save job files, and they will display on the jobs table where you can open... -
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pyWeb Literate Programming Tool
Literate Programming in pure Python
pyWeb is a Literate Programming tool that will work with any markup language and any programming langauge. The idea is to allow you to create great documentation with as constraints or limitations. -
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UniPyRange
Tool to fetch protein/DNA truncation constructs from Uniprot DB
Very simple python script which saves you the pains of counting the amino acids/DNA bases in fasta files from the Uniprot and NCBI RefSeq Database (1, 2). Lets say you want the amino acid sequence of range 128-387 from a 1000 amino acid protein - this script will help you to avoid counting mistakes by just showing you the specified sequence in amino acids and coding DNA base pairs (ideal for amplification primer design) of a specified Uniprot ID. - Requires BioPython (3) and Bioservices... -
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simple line command tool send several trames over TCP lan in AF_INET SOCK_STREAM and return elapsed times. usage: (pytestlan) ser IP PORT usage: (pytestlan) cli IP PORT nb_of_loop data_size example server: python pytestlan.py ser localhost 50000 example server: pytestlan.pyc ser 192.168.0.37 50000 example client (windows): pytestlan.exe cli 192.168.0.12 50000 1000 100 tested on linux, WinXP, Win7 Seven, 2008 Server.
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IncludeGraph
Determine which files get included in source files.
IncludeGraph is a tool written in Python that performs code analysis on a C and C++ source tree. It can determine the inclusion path for a header file as well as provide charts about which headers are the most included ones or which files include the most headers. It also has a limited knowledge of conditional preprocessor constructs by implementing a subset of the functionality of the C preprocessor. -
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ADTEx
Aberration detection in tumour exome
Aberration Detection in Tumour Exome (ADTEx) is a tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples. -
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LXCF - LXC Facility
LXCF (LXC Facility) generates LXC container of full OS environment.
LXCF (LXC Facility) is a tool that generates full OS environment as LXC virtual environment. http://lxcf.sourceforge.jp/index.html.en - It is based on libvirt-lxc - It can generate containers in a short time (in a few minutes each even if it is long). - It can manage a lot of containers. - It supports dynamic resource control of containers. - To use containers for a long term (a few years or more), you can update software on each container from the host. LXCF currently supports **Ubuntu... -
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VEEL
Visualize Estimates of Exponential Learning
VEEL is a simple tool to make plots of exponential learning curves for behavioral experiments. It also provides parameter estimates in output files. -
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DR14 T.meter
Compute the DR14 of a given audio file according to the procedure desc
Introduction to DR14 T.meter DR14 T.meter is a free and opens source command line tool for computing the Dynamic Range of your music according to the procedure used in the off-line meter released by the Pleasurize Music Foundation. This tool is very useful to measure how is loud your music and for understanding that a good quality album always has also a good dynamic, and it's also useful for understanding the effects of the so called loudness war. Dr14 t.meter is released under...
