Search Results for "scoring" - Page 3
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Showing 71 open source projects for "scoring"
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Error to trace to log to deploy. One click. No SSH.AppSignal links every error to the trace, the trace to the log, the log to the deploy that shipped it.
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MethyMer
Design of specific primer combinations for bisulfite sequencing
MethyMer is a Python-based tool aimed at selecting specific primers for amplification of complete CpG islands. These regions are difficult in terms of selection appropriate primers because of their low-complexity, polyN-, CG-richness, etc. MethyMer have a flexible scoring system capable of selecting primers in problematic regions (e.g. SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome). It also incorporates TCGA CpG methylation (microarrays) and gene expression (RNA-Seq) data, as well as methylation-expression correlation analysis results for 20 human cancer types. ... -
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DreamStudio by Volocian Studios
Free yourself
Volocian believes first and foremost that financial status shouldn’t be a barrier to entry in multimedia content creation. Whether you want to design a product or website, record a band, remix a song, or produce a feature length movie with professional post production graphics and effects, Volocian™ wants to help, even if you’re using borrowed hardware with no previous experience. We provide affordable products and services for any budget, including cost-free solutions for education and demo... -
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Scattertext 0.2.1
Beautiful visualizations of how language differs among document types
A tool for finding distinguishing terms in corpora and displaying them in an interactive HTML scatter plot. Points corresponding to terms are selectively labeled so that they don't overlap with other labels or points. -
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InMethyl
Design of target-specific primers for bis. sequencing of CpG-islands
...InMethyl provides a balance between various characteristics that allows to pick up primers in hard-to-study genomic regions. This balance is based on the calculation of scoring factor including primer pair specificity, nucleotide composition (sequence complexity), thermodynamic features (melting temperature, dimers dG etc.), presence of CpG-sites and other parameters. Users are intended to customize the desired or limit ranges of these values, as well as penalties for out-of-bounds values. InMethyl software allows to optimize combination of PCR primer pairs to perform the amplification of large genomic regions, e.g. ... -
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VADER
Lexicon and rule-based sentiment analysis tool
VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool designed for analyzing the sentiment of text, particularly in social media and short text formats. It is optimized for quick and accurate analysis of positive, negative, and neutral sentiments. -
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srst
Short Read Sequence Typing
Update - SRST2 Now Available ------ 25 Sep, 2013 This project has now been replaced by SRST2 - Short Read Sequence Typing for Bacterial Pathogens, available at http://katholt.github.io/srst2/ The new SRST2 program does gene typing as well as MLST (e.g. typing resistance genes, virulence genes, etc). SRST2 is faster and more accurate than the old SRST, using bowtie2 to achieve local alignments (no need for flanking sequences) and a brand new scoring system. -
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GEPETTO - Gene Prioritization in Java
GEPETTO (GEne Prioritization ExTended TOol)
...GEPETTO is written in Java/Python and supported by an advanced modular architecture, which means that it can easily be modified and extended by the user, in order to include alternative scoring methods and new data sources. We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database. Contact: bmhoan@gmail.com or walter.vincent.fr@gmail.com -
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UPDATE: The latest version of NNScore1 can be found here: http://git.durrantlab.com/jdurrant/nnscore1 The latest version of NNScore2 can be found here: http://git.durrantlab.com/jdurrant/nnscore2 ================ NNScore is a scoring function for characterizing the potency of receptor-ligand complexes. It is based on neural networks, computational models that simulate the microscopic organization of the brain.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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The Lost Amulet is a text-based RPG similar in style and plot to The Colossal Cave Adventure. You must enter the ruins of a castle to retrieve a lost artifact, the Amulet of Vigour.
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Bibs is a cross country (running) meet management and scoring program, which provides for teams entry, scoring, and results.
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OneDesign is a convenient scoring program for one-design sailboat racing. The program is written in python and uses the wxPython module to provide an attractive user interface on Windows, Mac OS X and most UNIX systems.
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Augustus
PMML-compliant scoring engine and analytic toolkit
Augustus development has moved to google code. The new project page is augustus.googlecode.com. New releases of the project are not currently being released to sourceforge. Augustus is designed for statistical and data mining models and produces and consumes models with 10,000s of segments. Versions of Augustus support PMML 3, 4.0.1, and 4.1. -
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TrackSpikes is a small cross-platform application to assist with managing and scoring track and field meets. Teams, events, and scoring are all customizable. The program produces results reports for events and team standings.
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Gameplay is similar to Bejewelled(tm), but using a hex rather than a square grid for more scoring options. Unique multi-swap moves. Theme-able (with 6 bundled themes). New themes are easy to create and share. Complete manual. Requires Python and Pygame.
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ProxyCat supplies a whole solution of Proxy, including proxy server exploration, validation, scoring and proxy list exchanging by means of peer-to-peer. User can surf the internet via the auto-generated fast and stable proxy. HTTP/HTTPS SOCKS are both
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Generic FlashCard program meant to handle a large number of flash cards and organize them in categories. Scoring, managing, and creating of flash cards will be relatively easy.
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Metascore is the system which will run metagovernment.org and any number of other community governance systems. It is a versionated policy-generation and discussion system combined with a recursive scoring system for ranking content and perhaps users.
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litersta
Litersta - textual analytics - software
Unstructured text is no match for Litersta - see further details here: https://litersta.com Working with text now becomes effortless when paired with Litersta textual analytics software. Unlike database fields, which are easily queried, text contains unstructured data that must be parsed for key objects that can be transformed in to powerful metrics. Litersta - textual analytics - software leverages statistical algorithms to programmatically locate, and extract, overall document...
