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A threaded Web graph (Power law random graph) generator written in Python. It can generate a synthetic Web graph of about one million nodes in a few minutes on a desktop machine. It implements a threaded variant of the RMAT algorithm.
A simple (~20 line python) O(n^6) algorithm for the traveling salesman problem that seems to do pretty well for most graphs; so well that I have not been able to find a graph which it does optimally solve. Those with spare cycles are welcome to help out.
A Java software for 3D visualization of graphs/networks. It implements many graph layout algorithms (such as force-directed methods), graph generators (such as scale-free networks) and graph modifiers. Most functions can be accessed through its GUI.
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boost_graph tried to wrap the C++ Boost Graph library in Python, providing graphalgorithms like Breadth First Search, DFS, Shortest Path, Topological sort. This project is dead (http://bayleshanks.com/pamv1)