Search Results for "assembly" - Page 2
Sort By:
Showing 114 open source projects for "assembly"
View related business solutions-
Our Free Plans just got better! | Auth0You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
-
G-P - Global EOR SolutionWith G-P's industry-leading Employer of Record (EOR) and Contractor solutions, you can hire, onboard and manage teams in 180+ countries — quickly and compliantly — without setting up entities.
-
1
Miasm
Reverse engineering framework in Python
The Miasm intermediate representation is used for multiple task: emulation through its jitter engine, symbolic execution, DSE, program analysis, but the intermediate representation can be a bit hard to read. We will present in this article new tricks Miasm has learned in 2018. Among them, the SSA/Out-of-SSA transformation, expression propagation and high-level operators can be joined to “lift” Miasm IR to a more human-readable language. We use graphviz to illustrate some graphs. Its layout... -
2
Coursebook
Introductory Systems Programming Textbook for University of Illinois
...This repository houses a high-quality, open-source introductory systems programming textbook used by the CS 341: System Programming course at the University of Illinois at Urbana-Champaign The book assumes that you have taken a programming language course and are familiar with assembly instructions. All of the code and instruction will be in C, as it is the de-facto language of the Linux Kernel. -
3
Drauger OS
Ubuntu-based Linux Gaming OS
Drauger OS is an Ubuntu-based Linux desktop gaming distribution that ships with many modifications and optimizations over stock Ubuntu that are intended to improve gaming performance and the gaming experience. From simple changes such as swapping Gnome out for the light-weight Xfce Desktop Environment and using a dark GTK theme by default, to more complex changes such as using a kernel compiled in-house and replacing PulseAudio with Pipewire. Drauger OS is built from the ground up with our... -
4
EfiPy
Python Library for accessing UEFI BIOS internal function by protocol
EfiPy is a Python Module on UEFI shell which can access UEFI BIOS kernel interface - System Table - Runtime Services - Boot Services pAnalyzer package - Tracing UEFI protocol calling flow Output protocol flow to screen or file with XML format CorePy (assembly package) - Simple Assembly code in Python environment. EfiPy Shell package- Simple uefi shell program coded with EfiPy library to prove EfiPy workable EfiPy leverage these open source packages - ctypes, CorePy. Samples https://sourceforge.net/u/efipy/svn/HEAD/tree/Trunk/ EfiPy Author: https://www.linkedin.com/in/max-wu-a9068b90/ -
Nonprofit Budgeting SoftwareMartus' collaborative and easy-to-use budgeting and reporting platform will save you hundreds of hours each year. It's designed to make the entire budgeting process easier and create unlimited financial transparency.
-
5
jsondata
Modular JSON by trees and branches, pointers and patches
... - JSON Relative Pointer - draft-handrews-relative-json-pointer/2018, contained in JSONPointer. - JSONPatch - RFC6902 for modification by patch lists. Provides the assembly of modular patch entries and the serialization of resulting patch lists. - JSONDiff - Diff utility for JSON data. - JSONSearch - Search utility JSON patterns. Online documents: https://jsondata.sourceforge.io/ -
6
XOS test builds
AOSP-based Operating System (On phone tap on "Try to download anyway")
halogenOS test builds (release builds are just a leftover) The test builds and modules are supposed to be only used by our testers. But if you are not a tester, and use these builds anyways, don't expect support if you get problems. You can report the bugs, but you have to be experienced enough to know how to revert back to a working state and how to report bugs and provide logs. -
7
QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
8
PBSuite
Software for Long-Read Sequencing Data from PacBio
This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to... -
9
Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
-
Get to know our award-winning HR software.BambooHR is all-in-one HR software made for small and medium businesses and the people who work in them—like you. Our software makes it easy to collect, maintain, and analyze your people data, improve the way you hire talent, onboard new employees, manage compensation, and develop your company culture. It’s designed to set you free to focus on what matters most—your people.
-
10
Cryptography Tools
Classic & Modern Cryptography tools
Cryptography Tools is a project to develop demonstration tools on classic (currently Caesar and Playfair) & modern crypto-systems, including private & public key encryptions, digital signatures, cryptographic hashes and authenticated encryption. -
11
SAT-Assembler
Scalable and accurate targeted gene assembly for large-scale NGS data
SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms. -
12
Scaffold_Builder
Combining de novo and reference-guided assembly with Scaffold_builder
...Gaps are filled with N's and small overlaps are aligned with Needleman–Wunsch algorithm and the consensus created with IUPAC codes. Scaffold_builder can help in the assembly and annotation of genomes by revealing what is missing and allowing targeted sequencing to close those gaps. (c) Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Please cite: "Combining de novo and reference-guided assembly with Scaffold_builder", Source Code for Biology and Medicine 2013. -
13
-
14
SIMBA
Simple Manager for Bacterial Assembly
Simba (SImple Manager for Bacterial Assemblies) is a Web interface for managing various processes of assembly of bacterial genomes. -
15
Crystal Space is an Open Source 3D SDK for Unix, Windows, and MacOS/X. It renders with OpenGL and features GLSL shaders, CG shaders, deferred rendering, dynamic shadows, bullet based physics library, terrain engine, skeleton based animation meshes, exporter for Blender, portals, etc...
-
16
CONTIGuator is a Python script for Linux environments whose purpose is to speed-up the bacterial genome assembly process and to obtain a first insight of the genome structure using the well-known artemis comparison tool (ACT).
-
17
Human Speakable Programming Language
foundation of the General Intelligence Operating System
HSPL is Human Speakable Programming Language, allowing for communication between human-to-computer and human-to-human in the same language. This project has moved to http://sourceforge.net/p/spel We are currently working on human-to-computer programming-language with mostly English base vocabulary. Though once we have that, we plan to add support for other world Languages, including Chinese, Spanish, Russian, Arabic, Hindi, among others. Eventually HSPL shall be the... -
18
mitoMaker
mitoMaker - a mitochondria assembly and annotation script
mitoMaker is a pipeline script developed to simplify the assembly and automatic annotation of mitochondrial genomes, based on raw NGS reads and an optional target reference. mitoMaker calls well known assemblers and algorithms, such as SOAPdenovo, MIRA and blast+ and parses their results providing easily readable outputs, such as FASTA, GENBANK, SEQUIN, PNG and others. General pipeline: 1-iterative De Novo assembly, with different k-mer values, trying to assemble a build that matches a target mitochondrial genome given. 2-searches for all mitochondrial gene features and circularization. 3-stores the best result found. 4-uses the best assembly as backbone for a reference based assembly, using MIRA and MITObim, trying to extend the mitogenome and close gaps. 5-annotates the best assembly, identifying the start and end position of each and every feature. 6-creates a folder with all the results (PNG, GENBANK, FASTA, SEQUIN, CAF, MAF and a stats logfile). -
19
pyz80 is a z80 cross-assembler written entirely in Python. It accepts text files with the syntax of the Sam Coupe's popular COMET assembler, and outputs a disk image suitable for loading in SimCoupe or transferring to floppy disk for use with a real Sam.
-
20
Magnolya
De novo CNV detection by co-assembly
Magnolya enables copy number variation (CNV) detections without using a reference genome. Magnolya directly compares two next-generation sequencing datasets. -
21
ByteCode IDE
ByteCode IDE for C++ , Java, Python, Assembly, HTML, CSS Developers
ByteCode IDE is a C++ , Java, Python, Assembly, HTML, CSS development environment. Features : 1. Syntax Highlighting 2. Debugger 3. Sample Code Template 4. Runnable on both Linux & Windows 5. One Click Paste & Github push And many more.... -
22
SLOCCount is an easy-to-use tool that counts Source Lines of Code (SLOC). It auto-determines the language(s) (inc. C, C++, Ada, Assembly, shell, COBOL, C#, Fortran, Haskell, Java, LISP/Scheme, Perl, PHP, Python, Ruby, SQL). It also estimates cost & time.
-
23
mitoMaker
mitoMaker - a mitochondria pipeline wrapper script
...After various attempts to build different mitochondrial genomes in the lab I studied, a general pipeline started to appear: assemble reads with MIRA or SOAPdenovo-Trans, look for a scaffold/contig that matches a closely-related species, check it to see if all expected genomic features are present (since mitochondria is well conserved), check to see if the assembly might have circularized (since it's a circular DNA). If a feature was missing, or it hasn't circularized, try and assemble again with different assembler parameters (mainly k-mer). Rinse and repeat until the best build is found. -
24
Darkfall Emulator
Develop an emulated Darkfall Online Server.
This project is the development of an open source fully emulated Darkfall Online Server and reverse engineering the proprietary game engine that DFO uses, the SF3D engine as well as its source code. -
25
USE secure operating system
a secure, open source OS for use inside USEagency facilities
A secure and open source operating system. All communications that reasonably can be will be encrypted. It will also have fined-tuned firewall capabilities, with a default policy of deny all inbound except HTTP HTTPS and SSH. Web browser will be sand boxed from other parts of the OS. In order to access saved passwords, cache, cookies, ect in web browser, username/password are required. Downloaded files (and any other files entering the system) will be subjected to both an exception-based and...
