Showing 729 open source projects for "data science"

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  • 1
    PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
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  • 2
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  • 3

    QUASR

    Cross-platform NGS processing and analysis pipeline in Python

    QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is...
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  • 4

    niftilib

    ** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **

    niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
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    Downloads: 24 This Week
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    pygolem

    Python API for the GOLEM Tokamak discharge database

    This simple Python API aims to provide a simple and easy to understand access to the discharge database of the GOLEM Tokamak. The scipy, numpy and matplotlib Python libraries are used for data analysis and plotting.
    Downloads: 0 This Week
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  • 6
    NLOPredict
    NLOPredict is a nonlinear optical prediction and data analysis tool. Nonlinear optical measurements can yield information about the structure of crystals, and orientation of molecules at surfaces and interfaces.
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  • 7
    PROJECT HAS MOVED: https://github.com/wiki2beamer
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  • 8
    VERTIS Virtual Scanner

    VERTIS Virtual Scanner

    A virtual scanner for 3D models.

    A virtual scanner that converts 3D models (in Wavefront .obj format) into pointcloud files (in PCL .pcd format). Useful for simulating robotic input. NOTE: This project has been merged into the project at https://github.com/canderegg/cfg_obj
    Downloads: 0 This Week
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  • 9
    SloppyPlot is a tool to import scientific datasets and create 2D plots from this data. There is a gnuplot postscript export available.
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  • 10

    Bamboo Engine

    Game framework on top of Python, Panda3D and Twisted

    Bamboo intends to be a complete end-to-end game framework for client/server applications using Twisted for data exchange, Panda3D for rendering and coded in Python. Support for PyPy/CPython may be considered at a later point. An Extreme/Agile Development model is in use to allow for emergent design (IE: changing requirements). Release is updated whenever a feature is added and all tests pass cleanly 100%
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  • 11
    Native FITS viewer/IRAF image server for Mac OS X.
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  • 12
    pyFormex is a program for generating, transforming and manipulating large geometrical models of 3D structures by sequences of mathematical operations.
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  • 13
    FreeCeilo is an interface for ceilometer CL31.A shell script is used for collecting data from the ceilometer and freeceilo is used for plotting the data.Tested and developed in SPACE ,Trivandrum
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  • 14
    HeWIT helps you create and fill out forms. It tells you if you've missed anything or made any mistakes. You can then send the form over email, upload to a web site, or pass it by memory stick to whoever needs it next.
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  • 15
    GWCNV is a genome-wide algorithm for detecting CNV associations with diseases. It works directly on a transformation of intensity data. It is powerful and sensitive in detecting small CNV associations, and retains high power for large CNVs.
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  • 16
    A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file...
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  • 17
    The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.
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  • 18
    AnnTools is an efficient, fast and robust bioinformatics tool annotating SNP and CNV calls generated from sequencing and microarray data.
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  • 19
    Forecast Production Assistant

    Forecast Production Assistant

    Met object database and interactive graphical editor

    Meteorologists use the FPA to create a series of weather charts, known as depictions, that show weather fields over a sequence of times. The weather fields can contain grid point data or sets of areas, lines or scattered points. The weather depictions are not just graphical displays, but windows into an object database. By connecting processes to the database, forecast offices can automatically generate forecast products or run local models, while spending more of their time on weather...
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  • 20
    SuStorID is an advanced Intrusion Detection System (IDS) for web services, based on machine learning. Its name comes from the term “Su Stori”, which in Sardinian language means “The Falcon”. It’s version is experimental, but demonstrates a number of interesting features, that can be readily exploited to detect and act against web attacks. SuStorID can be coupled with modsecurity, the well known web application firewall, to gather training data and provide for real-time counteractions. So,...
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  • 21

    xyz2eps

    python command line utility to print xyz-geometry to eps file format.

    xyz2eps.py is an command line utility written in Python programing language which prints the geometry from xyz-file directly to the eps-file format. Originally it was designed to study the problems related to grain boundaries in graphene.
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  • 22
    Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.
    Downloads: 4 This Week
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  • 23
    gsdview
    Geo-Spatial Data Viewer (GSDView) is a lightweight viewer for geo-spatial data and products. It is written in python and Qt4 and uses the GDAL library. GSDView is modular and has a simple plug-in architecture.
    Downloads: 0 This Week
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  • 24
    PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.
    Downloads: 4 This Week
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  • 25
    A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.
    Downloads: 0 This Week
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