Search Results for "aras-common" - Page 17
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Showing 584 open source projects for "aras-common"
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade-defining polymorphism. This functionality has been implemented using the tabix tool on the server side, providing simple and rapid access to the information at each tree node, including informative SNPs stored in VCF-similar files. ... -
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CCH
A genetics tool that identifies genomic regions of shared ancestry
Combinatorial Conflicting Homozygosity (CCH) uses dense Single Nucleotide Polymorphism (SNP) genotypes to identify regions of the genome inherited from a common ancestor among any or all subsets of a group. Analysis is rapid and can identify loci containing genes for dominant traits. CCH is robust to the presence of phenocopies and can detect undisclosed shared common ancestry. The associated publication regarding CCH may be accessed here: http://www.biomedcentral.com/1471-2164/16/163 If you use CCH please cite: Levine AP, Connor TM, Oygar DD, Neild GH, Segal AW, Maxwell PH, Gale DP. ... -
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RenApp
The File Renamer App
This Program renames files of specified extension in a specified directory with a common name and appended numbering This Program also removes backup files from Specified directories and sub-directories. -
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CIOS Audio Core
A cross platform audio inteface
CIOS Audio Core is the infrastructure and subsystem in Collective Intelligence Operation System. It is a cross platforms audio abstract interface, supports including Mac OS X, Linux, Android, iPhone OS and Windows 7. -
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Ymap - Yeast Mapping Analysis Pipeline
Pipeline for large-scale genome changes analysis of genome datasets.
...To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of heterozygosity (LOH) events in Candida albicans, the most common human fungal pathogen, we developed a pipeline for analyzing diverse genome-scale datasets from microarray, deep sequencing, and restriction site associated DNA sequence experiments for clinical and laboratory strains. The YMAP pipeline automatically illustrates genome-wide information in a single intuitive figure and is readily modified for the analysis of other categories of data and other pathogen species with small genomes. -
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miRStat
identification of common sets of microRNAs for groups of genes
miRStat enables identification of regulatory microRNA targeting several genes in a custom gene group. This Python application is based on the TargetScan 6.2 microRNA target prediction data. Conserved and Nonconserved site context+ scores files are required (unzip and place to directory with program). Available at http://targetscan.org/cgi-bin/targetscan/data_download.cgi?db=vert_61 -
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diCal-IBD
diCal-IBD predicts identical by descent tracts using sequence data
...It provides means for calculating the accuracy of the prediction, if the true tracts are available, plotting of the predicted tracts, their TMRCA (time to the most recent common ancestor) and corresponding posterior probabilities, and identification of putative recent positive selection through investigation of average IBD sharing -
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MusiqBox
An social musicsystem for your Pi and smartphone.
...You are also able to store music on the server itself and manage it with your smartphone or desktop. The aim of MusiqBox is to extend the functionality of an existing audio-system (e.g. common stereo) with this features: -Playback of common audio-formats like: mp3, ogg, flac, wave,… -Stream music files over the network -Store music files locally -Remote control -Playlist support -… -
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Dual-Boot Filename Filter
Sustain data readibility in a dual-boot Windows-Linux environment
...Windows have much stricter rules for file naming than other operating systems, so it is not always easy to create data on Linux, which will be read in Windows. Even burning discs can be tiresome, if they have to be readable in both environments. Common disc burning programs are able to rename your files if their name do not match the expectations of the wanted file system, but they usually do not list the problematic files for you to rename them manually. This program checks your files if they meet the expectations of various file systems. The aim is to develop a program which is not only able to list the problematic files, but even to rename them according to your own rules. -
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Penetration-Testing-Toolkit v1.0
A web interface for various penetration testing tools
Penetration-Testing-Toolkit is a web based project to automate Scanning a network,Exploring CMS, Generating Undectable metasploit payload, DNS-Queries, IP related informations, Information Gathering, Domain related info etc -
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sitecheck
Modular web site spider for web developers.
More than just a link checker, sitecheck is a website spider (also known as a crawler) which can assist with SEO by testing an entire site plus both inbound links from search engines and outbound links to other sites for the following issues: looping redirects (HTTP 301/302), broken links (HTTP 404), server errors (HTTP 500), spelling mistakes, low readability scores (using the Flesch Reading Ease test), missing/empty/duplicate meta tags, duplicate content, slow page speed, W3C validation errors and accessibility errors. Sitecheck can also spot some common causes of PCI compliance failure such as insecure content on secure pages, SQL injection/cross-site scripting (XSS) vulnerabilities, insecure encryption ciphers and open mail relays. Sources of information leakage such as email addresses and IP addresses in the headers or the page will be logged. Includes a separate module called domaincheck which checks the domain expiry date, SSL certificate expiry date and SPF records. -
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RhinoLINUX Main Edition
Desktop Linux - custom built on Debian/Ubuntu/Mint upstream codebases
RhinoLINUX aims to create a desktop OS with something for everyone, but with ease of use, flexibility and minimal fuss. It is a goal of the project that the OS will run or open ALL common/popular document/media/web format files without needing to add apps/plugins/codecs etc. RhinoLINUX Main Edition is our flagship product. We also have a Lite XFCE,KDE and Cinnamon Editions all hosted at SF.nef This latest release v8.0 is Trusty Tosca - built using Ubuntu 14.04 'trusty' source as codebase there have been added codecs/plugins and cross-platform support for Windows applications and legacy Operating Systems via our VirtualX suite of emulation and virtualization softwaare managers/sub-systems such as QEMU.WINE and VirtualBOX. ... -
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pyDBMS
DataBases Made Simpler - Database tool kit for multiple adapters
DBMS - DataBases Made Simpler is a database tool kit that wraps and provides uniform interface to other DB API compliant adapters. It manages connections, doing automatic imports and providing a uniform connection method to most common databases. Implements DictCursor, NamedTupleCursor and OrderedDictCursor. It currently supports IBM DB2, Firebird, MSSQL Server, MySQL, Oracle, PostgreSQL, SQLite and ODBC connections. -
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effgoogle
effgoogle protects your privacy by confusing Google's profile of you.
...For more information regarding exactly what Google uses this information for, DuckDuckGo has a good website that explains it all at donttrack.us. effgoogle is a ridiculously tiny and simple python program that opens up a user-specified number of Firefox instances, opens Google, and searches random phrases and common searches. This confuses Google and makes it more difficult for you to be tracked. There's also an option for effgoogle to make a list of phrases to be searched by harvesting google search suggestions and random titles of Wikipedia pages. Works with python 2.7 under Ubuntu linux, support for different python versions and oses soon to come. effgoogle is completely free and licensed under the Beerware license. -
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Domain Analyzer Security Tool
Finds all the security information for a given domain name
Domain analyzer is a security analysis tool which automatically discovers and reports information about the given domain. Its main purpose is to analyze domains in an unattended way. -
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Importer library to import assets from different common 3D file formats such as Collada, Blend, Obj, X, 3DS, LWO, MD5, MD2, MD3, MDL, MS3D and a lot of other formats. The data is stored in an own in-memory data-format, which can be easily processed. www.open3mod.com/ is a 3D model viewer and exporter based on Assimp that is also Open Source.
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Helal Linux
An Ubuntu based GNU/Linux system, suited for Muslim users.
Helal Linux is an Ubuntu based distribution , it is main goal is to provide a modern, cool, and a stable Linux OS with a pre-installed system settings and software, supporting both Arab and Muslim users with many new features. The word "Helal" is an Arabic word meaning "Crescent" and translated literati from Arabic to English, it has nothing to do with "Halal" which is a something that you can do in Islam. -
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isbnlib
A Python library to manipulate ISBNs.
A Python library to manipulate ISBNs. Through abstract classes and Factories, the library provides developers with a transparent interface to query any of the many different web services provided without efforts. -
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Steel TTS
A cross-platform wrapper for common text-to-speech engines in Python
Steel is a cross-platform package for using common text-to-speech (speech synthesis) engines in Python. Steel currently supports the following TTS software: - Microsoft Speech API 5 (SAPI5) - eSpeak - NS Speech Synthesis - FreeTTS Documentation: http://sourceforge.net/p/steeltts/wiki/ Bug Tracker: http://sourceforge.net/p/steeltts/tickets/ If you are interested in contributing to the Steel TTS codebase, or would like to make a feature-request, please contact the lead developer, Jasper Danielson, at jrd4@rice.edu. -
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WebChemViewer
A simple program for sharing molecular structures with associated data
Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. -
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ECharts is a state machine-based programming language for event-driven systems derived from the standardized UML Statecharts language. ECharts has a proven track-record in a large-scale commercial deployment. Take a look at what ECharts has to offer!
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Build by Rajib Acharyya(Spid3r64) ANONIMITY Metasploit Armitage Cobalt Strike & veil WIRELESS SECURITY SNIFFERS PYTHON,PERL & RUBY FORENSICS BRUTE FORCE & DDOS ANDROID TOOLS Based on : Ubuntu 12.04 LTS(32bit) (Custom Backbox) user:root pass:india Kernel version =>3.8.0-29 generic Desktop environment's => xfce,conky,Docky Version 1.0(full) Extra Softwares inbuilt => Skype,Virtualbox,Filezila,Chromium Browser,XDM(Xtreme Download Manager)...
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Error Propagation Calculator
Easily propagate measurement errors through mathematical operations.
...Simply point and click to enter values and errors, input your expression and press compute. The program evaluates native Python code, but the user does not need to know the syntax as common operators are provided as buttons, similar to a scientific calculator. -Evaluate expressions with as much as 26 different variable and error pairs. -Copy output to the system clipboard by simply double clicking the output field. -Cross-platform: Works on Windows, Linux, and Mac. All calculations are dependent on the uncertainties package (Uncertainties: a Python package for calculations with uncertainties, Eric O. ... -
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TextBlob
TextBlob is a Python library for processing textual data
Simple, Pythonic, text processing, Sentiment analysis, part-of-speech tagging, noun phrase extraction, translation, and more. It provides a simple API for diving into common natural language processing (NLP) tasks such as part-of-speech tagging, noun phrase extraction, sentiment analysis, classification, translation, and more. TextBlob stands on the giant shoulders of NLTK and pattern, and plays nicely with both. Supports word inflection (pluralization and singularization) and lemmatization, as well as spelling correction. ... -
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Genomic Binding Sites Analyser (BiSA)
Genomic Region Archiving and Binding Sites Analysis (BiSA)
...Analysis results can be restricted to a chromosome; the minimum base pair overlap in two sets or maximum distance between regions can be set; as can the maximum allowed distance between region centres. BiSA is capable of reporting overlapping regions that share common base pairs; regions that are nearby; regions that are not overlapping; average region sizes. BiSA can also annotate binding regions of interest with nearby genes. The results of overlap analysis can be imported into the Knowledge Base, allowing them to go into downstream analysis and independent annotation. A Venn diagram tool is also integrated into the software to allow users to visualize overlap results.
