Search Results for "reference" - Page 15

We introduce ARDEN (Artificial Reference Driven Estimation of false positives in NGS data), a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.

...The program runs on any Python-enabled platform, including GNU/Linux and MS\Windows OSs. To run the program you will need a python interpreter ver. 2.x and compatible versions of numpy, scipy and matplotlib libraries. See screenshot for usage reference.

The National Institutes of Science and Technology maintains the National Software Reference Library. As part of this, they keep track of SHA-1 hashes of millions of known pieces of software (the "Reference Data Set"). Unfortunately, there are very few tools to help users query the NSRL RDS. That's where nsrlquery comes in.

Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the extension graph that maximizes the cumulative contig length. ...

Provide a reference implementation of Moving Taylor Bayesian Regression, a method for nonparametric multi-dimensional function estimation with correlated errors from finite samples, as a Python package based on SciPy

Stuck in init level 1 without any clue or proper cheatsheet printout? I've been there a good many times, so I decided to create a command reference, available where I need it, in the command line interface.

meBiblio was specially developed as a small and accessible Python-based bibliography tool. meBiblio can organize your reference library, allows easy search in your references and permits immediate retrieval and examination of digitally stored literature items. It connects to online catalogs as PUBMED to retrieve data.

...In its current phase it currently scans google dorks and tests for sql vulnerabilities. Once urls are harvested from google dorks they are saved to a log file for future reference. One a sql check is run, the vulnerable URLs are saved to a seperate log file. View the readme in /docs for more information.

A python-based calculator that uses the Sabine, Norris-Eyring and Fitzroy formulae to calculate the RT60 time of a room with given specifications. Material list from SAE Institute reference.

A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file (e.g., proportion of character/numeric values, min/mean/median/max, missing values, correlation with a target column)...

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.

A simple proof of concept brute forcer that depends on weak key systems depending on interest I might add more to make it more useful for things other then a reference

"Plexicon" is a desktop application of dictionary written in python with the interface implemented in pygtk. It currently supports two languages : English (being an international language) & Bengali (being my native language)

Wizard-like software to manage a scientific repository (articles or any digital document). Citation information(BibTeX) is automatically corrected. From the repository, get copies of items, list of references+citations. NEW:handles real documents.

MAXIMUS is a genome assembly pipeline which takes the best out of multiple reference assemblies and de novo assembly. The benefits of this approach include better assembled repetitive regions, less gaps and higher accuracy for the resultant assembly.

A library and reference application for viewing and analysing raster and vector geospatial data.

Simple python script for keeping a backup set with an arbitrary frequency and any number of surviving snapshots. Uses the rsync reference directory feature to minimize space by using file hard links. Launch it from /etc/crontab.

Jeszra is a visual designtool, which combines 2D- vector graphics and GUI design. Jeszra is written in Tcl/Tk and creates reusable code for: * Tcl, Ruby, Lisp and Python. * DocBook based reference pages. * SVG import and export.

A Workflow Management System for scientific environments written in C++ based on the Petri Nets formalism. It uses the Grid Workflow Description Language (GWorkflowDL) as reference language.

DigestIt! is a tool to browse text files with full interactive cross reference. It is written for digesting source code. So there comes the name: DigestIt! I use it on several huge projects for more than 7 years. Latest: Feb. 04, 2008

The Automatic Model Optimization Reference Implementation, AMORI, is a framework that integrates the modelling and the optimization processes by providing a plug-in interface for both. A genetic algorithm and Markov simulations are currently implemented.

Quick reference for switching between mathematical computation environments for computer algebra, numeric processing and data visualisation. Examples are Matlab, IDL, SPlus, and their open-source counterparts Octave, Scilab, Python+NumPy and R.

Battery Life Tool Kit is a set of scripts and programs to monitor and log power consumption of Linux laptops/notebooks under different workloads. Set of reference workloads is included in the Tool Kit

It's a rule set agnostic, server operating system agnostic, client operating system agnostic gaming engine. We're building a reference shard to show others how they can deploy the engine.

This is simple and tiny template framework module. It processing is speedy. And provides extract variables, dictionary reference and sequencial variable loop. Import a tinpy module and call the build function, so it became generate document with templat