Search Results for "patterns" - Page 11
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Showing 295 open source projects for "patterns"
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Gene-Environment iNteraction Simulator 2
A tool able to simulate gene-environment and gene-gene interactions.
Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the Simulator more intuitive, the input parameters are expressed as standard epidemiological quantities. ... -
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Algorithms in Python
Data Structures and Algorithms in Python
...It includes code for graph algorithms, heap data structures, stacks, queues, and more — each implemented cleanly so learners can trace logic and adapt for their problems. The repository is particularly useful for people preparing for competitive programming, job interviews, or building a foundational understanding of algorithmic patterns. Because it’s openly maintained, you can browse through issues, see test cases, and observe coding style in a “learning through code” fashion. It also serves as a playground where you can add problems, measure performance, and compare different algorithmic approaches. For anyone striving to move from “I know the syntax” to “I know how to use the right algorithm at the right time,” this repository is a practical asset. -
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PyPattyrn
A simple library for implementing common design patterns
PyPattyrn is a Python package aiming to make it easier and faster to implement design patterns into your own projects. Design patterns by nature cannot be directly translated into code as they are just a description of how to solve a particular problem. However, many of the common design patterns have boilerplate code that is common throughout all implementations of the pattern. This package captures that common code and makes it easy to use so that you don't have to write it yourself in all your projects. -
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ExSTraCS
Extended Supervised Tracking and Classifying System
This advanced machine learning algorithm is a Michigan-style learning classifier system (LCS) developed to specialize in classification, prediction, data mining, and knowledge discovery tasks. Michigan-style LCS algorithms constitute a unique class of algorithms that distribute learned patterns over a collaborative population of of individually interpretable IF:THEN rules, allowing them to flexibly and effectively describe complex and diverse problem spaces. ExSTraCS was primarily developed to address problems in epidemiological data mining to identify complex patterns relating predictive attributes in noisy datasets to disease phenotypes of interest. ... -
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puddletag
SImple, powerful audio tagger for GNU/Linux
...Unlike most taggers for GNU/Linux, it uses a spreadsheet-like layout so that all the tags you want to edit by hand are visible and easily editable. The usual tag editor features are supported like extracting tag information from filenames, renaming files based on their tags by using patterns and basic tag editing. Then there’re Functions, which can do things like replace text, trim it, do case conversions, etc. Actions can automate repetitive tasks. Doing web lookups using Amazon (including cover art), Discogs (does cover art too!), FreeDB and MusicBrainz is also supported. There’s quite a bit more, but I’ve reached my comma quota. ... -
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/ The Multiword Expressions toolkit aids in the automatic identification and extraction of multiword units in running text. These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics. The mwetoolkit can be... -
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Django Extra Views
Django's class-based generic views are awesome
Django's class-based generic views are awesome, let's have more of them. Django-extra-views is a Django package that introduces additional class-based views in order to simplify common design patterns such as those found in the Django admin interface. Supported Python and Django versions: Python 3.5+, Django 2.1–3.2, see tox.ini for an up-to-date list. Add support for pagination in ModelFormSetView and its derivatives, the goal being to be able to mimic the change_list view in Django's admin. Currently, this is proving difficult because of how Django's MultipleObjectMixin handles pagination. -
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superboucle
Loop based software with jack transport, record and midi controllable
...Typical usage : * You need to control jack transport with external midi device and want a button to jump to a specified location in song. * You have some instruments patterns but you have no idea of song structure. * You make live performance with pre-recorded instruments. -
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This project provides a Fortran90 library and a python module for singular spectrum analyses such as PCA/EOF or MSSA. It is intended for people interested, for example, in analysing climate or financial variability.
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MITRE Common Layer 3
Approach to choose MANET routing peers for existing protocols.
...In addition, our approach works as a pure interface between (any) MANET radio terminal and any IP router, so nodes using our interface interoperate with nodes that do not use this interface or with nodes using different algorithms to select routing peers. This software is a prototype of the Common Layer 3 interface for two different mobility patterns on a mobile network using OLSR for MANET routing and OSPFv2 for IP routing. Draft RFC describing this interface in detail may be found at https://datatracker.ietf.org/doc/draft-shaio-manet-common-l3-interface/. -
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TODOs
Search TODO, FIXME and similar comments in project files.
TODOs is a small command-line utility to search TODO, FIXME and similar comments in project files. It is written in Python 3 and licensed under the terms of GNU GPL 3 license. Supported output formats are TXT, HTML and XML. -
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Hierarchical cluster engine HCE
Hierarchical Cluster Engine project
The main idea of this project – to implement the solution that can be used to: construct custom network mesh or distributed network cluster structure with several relations types between nodes, formalize the data flow processing goes from upper node level central source point to down nodes and backward, formalize the management requests handling from multiple source points, support native reducing of multiple nodes results (aggregation, duplicates elimination, sorting and so on), internally support powerful full-text search engine and data storage, provide transactions-less and transactional requests processing, support flexible run-time changes of cluster infrastructure, have many languages bindings for client-side integration APIs in one product build on C++ language... Also, HCE includes the highlighter application. This is utility to get fast parallel multi-algorithmic textual patterns highlighting. It provides cli UI, works as filter console tool and uses json format of prot -
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copy
Advanced command line copy tool
copy is a command line tool to copy files and directories written in Python. It behaves just like POSIX cp but has some additional options like resuming aborted copying jobs. FEATURES: - resume partly copied files - exclude file patterns from copying - semi-blocking -i option: copy will first copy everything it can and then ask for files to overwrite View the wiki for installation instructions. copy passes all relevant tests for a POSIX cp but testers are always welcome! -
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nacho
Python micro web-framework and asynchronous networking library
Nacho is an open-source CLI tool (or library) that streamlines the creation of RESTful APIs, scaffolding, or microservices in a chosen framework, reducing boilerplate and enabling rapid building of backend services. It focuses on productivity by providing commands to generate endpoints, data models, controllers, and routing based on standard patterns (CRUD, REST conventions). The tool also includes support for middleware integration, automatic documentation (such as via OpenAPI/Swagger), and ready hooks for authentication or authorization setup. Developers can customise templates used for generation or plug custom patterns, which makes the tool suitable across small utilities or large service fleets. ... -
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This is an implementation of the Model-View-Controller (MVC) and the Observer patterns for the PyGTK2 graphic toolkit. See the project Homepage for further information.
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PolyCTLDesigner
Python scripts for designing polyepitope T-cell immunogens
Given the peptides (T-cell epitopes) PolyCTLDesigner selects flanking sequences to optimize TAP-binding and joins resulting oligopeptides into a polyepitope in a way providing efficient liberation of potential epitopes by proteasomal and/or immunoproteasomal processing and minimizing the number of junctional epitopes. For constructing polyepitopes PolyCTLDesigner utilizes known amino acid patterns of proteasome cleavage and TAP-binding specificity. PolyCTLDesigner is also able to choose antigenic peptides covering selected HLA repertoire with desired redundancy rate. Given the antigen sequences PolyCTLDesigner is also able to select T-helper epitopes. For predicting T-cell epitopes it uses TEpredict. -
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Application to create 'electronic fluorescent pictographic' representations of gene expression patterns. Created at the Provart lab of the department of Cell & Systems Biology, University of Toronto.
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Ablator
A tool for automating laser ablations for neuroscience
Ablator is a suite of software that automates the microscopic detection of cell targets and also directs a 2-photon microscope to lesion these targets in arbitrary patterns for neuroscience research. See Hayes et al 2012 for an example of its usage (http://www.pnas.org/content/109/21/8286.abstract). -
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zopoclient
Scriptable GTK based Python MUD Client
...It is thus platform independent and provides a good looking interface in any system. Also, multiview scrolling is provided. Implemented features are triggers, macros and timers. Triggers and macros recognize patterns in the regular ways plus in an AL compatible mode. Actions can be defined by users as directly commands. Alternatively, in script mode, the action text is interpreted as Python code. The mud, match objects and defined variables are accessible from any feature. For the more advanced user, the implementation is small and extensible. ... -
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Crease Converter
Converts *.tmd5 to *.cp
A Simple Useful Python project what can be used to conver Treemaker5 (*.tmd5) crease patterns to an understandable *.cp file what can be imported by several applications... -
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Mapnik is an OpenSource C++/Python toolkit for developing GIS (Geographic Information Systems) applications. At the core is a C++ shared library providing algorithms/patterns for spatial data access and visualization.
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Canorus is the next generation music score editor. It is the official successor of NoteEdit. It uses Qt4, has scripting capibilities and uses modern development standards like eclipse, patterns and test units as base.
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Effacor
Protect sensitive data that has been deleted from recovery.
...Client Data must be protected from recovery in the event of theft. Blue-Pencil was created to fulfill that. "Blue-Pencil" protects sensitive data by "sanitizing" it - writing over it using special patterns designed to make data unrecoverable by traditional means before deletion thus keeping the data safe from prying eyes. -
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Simple python code that produces color-coded quality plots based on fastq format read quality scores. Scores are averaged over binned read tile coordinates. Useful for spotting spatial quality patterns.
