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A suite of programs for performing particle image velocimetry, a common technique in the field of fluid mechanics. The suite includes programs to perform cross-correlation, synthetic image generation, as well as graphical visualization.
Excited Energy Levels and Various Shapes (EELViS) was developed for calculation of the Extended Tao-Eldrup model results. The relation between potential well dimensions and positronium (Ps) lifetime can be calculated using this code.
Software for clustering networks as described in "Information-theoretic approach to network modularity" (Phys. Rev. E 71, 046117 (2005); http://link.aps.org/abstract/PRE/v71/e046117).
software for identifying modules in networks (e.g. "community detection"), as described in "a bayesian approach to network modularity" (physical review letters 100, 258701 (2008); http://link.aps.org/abstract/PRL/v100/e258701).
The dwi-toolbox provides a set of free and open-source Matlab routines for the simulation and analysis of Diffusion-Weighted Magnetic Resonance Imaging data. It includes data-fitting, simulation, visualization and statistical components.
MATLAB driver routines for the thermoluminescence apparatus using PT100 resistors as the heating and sensing elements described in the Review of Scientific Instruments v78, 083905 (2007). [DOI: 10.1063/1.2776972]
QCF is a toolbox of Quantum Computing Functions for Matlab and Octave. It is based on the syntax of Nielsen & Chuang's book 'Quantum Computing and Quantum Information'. It includes simulations of the Grover and Deutsch algorithms and a pdf tutorial.
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Cell Motility Analysis Package analyzes timelapse sequences of moving cells. Various quantitites characterizing motility are calculated, including normal velocity of the membrane, cell contact area, and spatio-temporal auto-correlation functions.
The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.
Blit contains a group of highly efficient iterative sparse solvers that can handle multiple right-hand-sides (i.e. block solvers). We will implement BLQMR, BLGMRES and other block algorithms in MATLAB, FORTRAN 90, C/C++, CUDA and OpenCL.